LOCUS BC040494 4397 bp mRNA linear HTC 09-SEP-2005
DEFINITION Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 2, mRNA
(cDNA clone IMAGE:5297011), with apparent retained intron.
ACCESSION BC040494
VERSION BC040494.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4397)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4397)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: l Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222304
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4397
/db_xref="H-InvDB:HIT000096191"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5297011"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 855 a 1221 c 1351 g 970 t
ORIGIN
1 ggggtcaggg gcggggcgcc gcaggaggcc gggactcctg gcggaggagc cccaaggagg
61 cccgcctgac gactgaccag ttgccatggc atcctactac gagatcctag acgtgccgcg
121 aagtgcgtcc gctgatgaca tcaagaaggc gtatcggcgc aaggctctcc agtggcaccc
181 agacaaaaac ccagataata aagagtttgc tgagaagaaa tttaaggagg tggccgaggc
241 atatgaagtg ctgtctgaca gtaagggccg gggtcaggca ggacccagca catcaccccc
301 tacttcatgc cccagctcac attttcttaa agcaatgtct ctgccaccta gtttcctctg
361 tgcctttttc cagcctgaca tttaagctcc cccctcccac agggacagct cagtgtctgc
421 tccccagagt ctggtaggag tggctggcat gagacctgaa aggggaagga agcagggcag
481 gtaactcatg tgagctgagc ctcctgcgtg caaggcattg gtgggtgtca tctccatgag
541 ttctcacagc cgtcctatga ggcaggttct atcaccccta ttttacaggc aaggaaactg
601 aggctgagag aggtgaagta acttgctcaa ggccacgcag agctggaata tgaatccagg
661 tctgcctgtt tattgattca ttcgaaaagt aattcagtga atggtgacag tgtccggcac
721 tcgctgggtg ctggggaaac tggaggacaa gcaggcactg tctttgccca gaggggcagg
781 gaagaccaac acctaccagg cacacacaca gacacagtta cagcttgtga agagtattcc
841 gagggaagaa acagggcagg tggagtgcta gggaataatg tgcacttgct ttagttctgg
901 tggttgtaga aggcctctcc gagaaggtga catttaggct aagccctggt gaataataat
961 gtagtaatca ttagctaaca tttattgaac actttctatg tgtcaggcac tggtaggcag
1021 tttacgtgga tggtctcatt tgatctgtgc aacaaccctg tgcggtaggt gttgtgatga
1081 cagccatttt ccagatgaga agaggccagc tgtgtgaaag gctgagttgc tgcctaaacc
1141 tatagcccgt gtcccctggg tcccctgctg tgcctgcttt cccccgccaa gtgtcagagt
1201 gtcagtctct ggacaatcct ttgaacgtcc tagcctggga ggggagccca tcccagaggg
1261 agggtgaaat gatctggtct ctttttgcag agcacaagcg ggagatttac gaccgctatg
1321 gccgggaagg gctgacaggg acaggaactg gcccatctcg ggcagaagct ggcagtggtg
1381 ggcctggctt caccttcacc ttccgcagcc ccgaggaggt cttccgggaa ttctttggga
1441 gtggagaccc ttttgcagag ctctttgatg acctgggccc cttctcagag cttcagaacc
1501 ggggttcccg acactcaggc cccttcttta ccttctcttc ctccttccct gggcactccg
1561 gtaagttctg ccccttccca cgtttgcaag ctccgattcc tggaacccct ggcttgagct
1621 tgttgctttt ccaagcctgt ctcctgtgtt gggagccctg cctccagcag ccctgcgagg
1681 cggcctggag cctcggtgac cacaacaggc agcgcagtct tcttctaacc acctctcctc
1741 ctcctccctt gtcccgatgc cagatttctc ctcctcatct ttctccttca gtcctggggc
1801 tggtgctttt cgctctgttt ctacatctac cacctttgtc caaggacgcc gcatcaccac
1861 acgcaggtga gagctccttc tggggccata gaggggtgag aggtctgctg gggagctgtg
1921 ttcaaataga aagttggctc cttgagggca gggcccagtc tgcgctctct actgcggtgg
1981 ccagaactgg gaccagcgcc tgcaggattc tgtcactgct cgttgcctga actgtgctgt
2041 ctcccacaga atcatggaga acgggcagga gcgggtggaa gtggaggagg atgggcagct
2101 gaagtcagtc acaatcaatg gtgtcccaga tgacctggca ctgggcttgg agctgagccg
2161 tcgcgagcag cagccgtcag tcacttccag gtctgggggc actcaggtcc agcagacccc
2221 tgcctcatgc cccttggaca gcgacctctc tgaggatgag gacctgcagc tggccatggc
2281 ctacagcctg tcagagatgg aggcagctgg gaagaaaccc gcaggtgggc gggaggcaca
2341 gcaccgacgg caggggcggc ccaaggccca gcaccaagat ccaggcttgg gggggaccca
2401 ggagggtgcg aggggtgaag caaccaaacg cagtccatcc ccagaggaga aggcctctcg
2461 ctgcctcatc ctctgaacac cgggcccaac ctgatctgat ccagatcttg actggggggt
2521 ctgactcact gtgggaagag aagaggggag tatcctgagt tgtaggaact gctttccaac
2581 tccaagctcc ctccacaagt ttccctccca ggccccccac accccagtgt ggacttggga
2641 tttgctgtgc tcagcccagg gctgataggt ccctggtgaa gcccagggtg gggggtgtca
2701 gggcagtgga ggggcccgag gagccaggtt gcatttattg gatggggagc tccaaggggc
2761 attagtggtt tgggctgggc cttttgtgcc ctggtactct gccacctgtg ttgctgatgg
2821 tgtcaaggaa ggaggacttg gcctagggtt gtctgagccg gagccggcag ctccactgga
2881 gagcagtgca ggcagagtgg agcctcctgc tctcctggac cagctgcaga cccccaaccc
2941 tggtttctgt gccatgttgc gctctgaccg tctctgttgc ttctcttctg gtgttgcttc
3001 tcctccctcc cattctctct gcaactccct gcgggccgca tcgcttgctt tcactgccgt
3061 ctggctagga ctcccttctt ccttccttcc ccgagaaggc ctcaatgtgg cgaggaagat
3121 gctggggccg gtagggctgt gagatcttct ggggaggcta gccgggtggg gcgggagcct
3181 ctcagctgtc cagattcaga actggagccc actcctcctc cctctcgttg cctcagcctg
3241 ccctcaccct caggactagg cagaggtgag gctggctcac cctgaagagg tgggatagga
3301 ccgggggacc ccagagggag gcctaggagg ggactgcacc catactgctt cgctaccaca
3361 aatcagggct cagggagagg ccatgcggcc agcccaggtc tgcatgctga gccccatcct
3421 ccacagcttg ccgctgacgc tctctcctgt caccccgccc ctgctctctc cccagatgtg
3481 ttctgagctg gatgccgggt tccagaatcg ctgcacagtt ccaacaggac agcgccttcc
3541 cccatgcgct gggaggggac cctccatttc tccccctcac ccatgctgag tgtagagccg
3601 gggcctgggt ggcgggtggg ggccgggtgg gaggtggcag tagtcttagc ctgtgcactc
3661 tcttccttgg gtgtttggtg ctggctcctg gggactacaa atcccagagt gcggtgtgcc
3721 cggcctcatt tctgatagat cccgcttggg ggaggtggtg tatggttacg gagctgtgca
3781 tcttgggaca tgtagtagcc caggtcggct tgtcactcgc tgtgagatgg ggagattttg
3841 tcttttgatt tatccctgta gggctggcag ggttgtagat gaagggggaa tgatctgagc
3901 cttggttccc ctgacacgtc ttgctagccc cagggttaga gtgggcaggg cagagccgcg
3961 cagcacctgg gagcggtacc tttcccttgg gcagcctggg gtcccaggaa caagccaggg
4021 cgagtggcat gtctgcctga gcagggtgtg gccccagaaa gctgaggagt gtgggctggc
4081 agagagcttc gagggcaagg ccacccgcgg gggcgtgtgt gtggtggggc ttggcatgtg
4141 atggcagctc caggcatgcc gctgcttgta tggctttctt tggcctctga ccctgctgcc
4201 cattctttcc aacatcacag atgaactgcc tctcctcctc cctgcctggg gagcccagtg
4261 gccagggagg ggagtggtgg agccagtcgc tgtaacactg agcctcagag acgaaccaaa
4321 accagctggg ctgagctcag atccaggggg aaatgctgga agtcaataaa actgagtttt
4381 gagaaaaaaa aaaaaaa
//