LOCUS BC040492 5228 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens secernin 1, mRNA (cDNA clone MGC:33750 IMAGE:5314711),
complete cds.
ACCESSION BC040492
VERSION BC040492.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5228)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5228)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: p Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28461170.
FEATURES Location/Qualifiers
source 1..5228
/db_xref="H-InvDB:HIT000052403"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33750 IMAGE:5314711"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5228
/gene="SCRN1"
/gene_synonym="KIAA0193"
/gene_synonym="SES1"
/db_xref="GeneID:9805"
/db_xref="HGNC:HGNC:22192"
CDS 122..1366
/gene="SCRN1"
/gene_synonym="KIAA0193"
/gene_synonym="SES1"
/codon_start=1
/product="secernin 1"
/protein_id="AAH40492.1"
/db_xref="GeneID:9805"
/db_xref="HGNC:HGNC:22192"
/translation="MAAAPPSYCFVAFPPRAKDGLVVFGKNSARPRDEVQEVVYFSAA
DHEPESKVECTYISIDQVPRTYAIMISRPAWLWGAEMGANEHGVCIANEAINTREPAA
EIEALLGMDLVRLGLERGETAKEALDVIVSLLEEHGQGGNYFEDANSCHSFQSAYLIV
DRDEAWVLETIGKYWAAEKVTEGVRCICSQLSLTTKMDAEHPELRSYAQSQGWWTGEG
EFNFSEVFSPVEDHLDCGAGKDSLEKQEESITVQTMMNTLRDKASGVCIDSEFFLTTA
SGVSVLPQNRSSPCIHYFTGTHDPSRSIFKPFIFVDDVKLVPKTQSPCFGDDDPAKKE
PRFQEKPDRRHELYKAHEWARAIIESDQEQGRKLRSTMLELEKQGLEAMEEILTSSEP
LDPAEVGDLFYDCVDTEIKFFK"
BASE COUNT 1431 a 1150 c 1285 g 1362 t
ORIGIN
1 actgcagctg cagcccccga ggtcgccgca gtaatccgga cccggcagca cccgcaccct
61 cggcggccgc agcctcagca ccgcagagcg gagagcggag cccggagccc gccgccccag
121 gatggctgca gctcctccaa gttactgttt tgttgccttc cctccacgtg ctaaggatgg
181 tctggtggta tttgggaaaa attcagcccg gcccagagat gaagtgcaag aggttgtgta
241 tttctcggct gctgatcacg aaccggagag caaggttgag tgcacttaca tttcaatcga
301 ccaagttcca aggacctatg ccataatgat aagcagaccc gcctggctct ggggagcaga
361 aatgggagcc aatgaacatg gagtgtgcat agccaatgaa gccatcaaca ccagagagcc
421 agctgccgag atagaagcct tgctggggat ggatctggtc aggcttggtt tagaaagagg
481 ggaaacagct aaagaagcct tagatgtcat tgtctccttg ttggaagaac atggacaagg
541 tgggaattac tttgaagatg caaactcctg ccacagcttc caaagtgcat atctgattgt
601 ggatcgtgat gaagcctggg tgctcgagac catagggaag tactgggctg ccgagaaagt
661 cacagaggga gtgaggtgca tttgcagtca gctttcgctc accactaaga tggatgcaga
721 gcatccggaa ctcaggagtt acgctcagag ccaaggttgg tggacgggag agggcgagtt
781 caatttttcc gaagtctttt ctccagttga ggatcatcta gactgcggtg ctggcaaaga
841 cagcttagaa aaacaagaag aaagcatcac agtgcagact atgatgaaca ccttacggga
901 caaagccagc ggagtgtgca tagactctga gtttttcctc accacagcca gtggagtgtc
961 tgtcctgccg cagaatagaa gctctccgtg cattcactac ttcactggaa cccatgatcc
1021 ttccaggtcc atattcaagc ctttcatctt tgttgatgac gtaaaacttg tccccaaaac
1081 acagtctccc tgttttgggg atgacgaccc tgccaaaaag gagcctcggt tccaggagaa
1141 accagaccgc cggcatgagc tgtacaaagc ccacgagtgg gcacgtgcca tcatcgaaag
1201 tgaccaggag caaggtcgca agctgaggag caccatgctg gagctggaga agcaaggcct
1261 ggaagccatg gaagaaatcc tgaccagctc cgagccactg gaccctgcgg aagtggggga
1321 ccttttctat gactgtgttg acacggagat taagttcttt aagtgaagta agcattccct
1381 ttccccttct tatttaagac ttcccacctt actaaattac cagcaaaaca aaccactctc
1441 ctgtttgagt aaaatgagaa agttaatatg tggcctcctt ttctgaagcc agatcaaact
1501 gttaccttgt gttccacctt gaatctcaca gcgtcccctt ctgcaatgta ggtctccttc
1561 ctgtgcagtg taacatgtat cccgttgcct gttgttcggt tgtgtgacta attgtggatt
1621 ttaagctgct attattgtat ttcagtggca atggacacat tagcctttta caagaggact
1681 agagttcatc aagccttgaa aggcaggctt cacagtgccg agttggcggg aaaagcaaat
1741 tcttttgaag tcttagtctt tccctcagta gcggtttctt tcaggttaac aagaggcatt
1801 tgtgcacaca cacagggctc ttgggtgtgt tgtcaagggg accctccgtg gcctcctgtg
1861 agtgcatgcc tgtagtgcac agtgtctcta caggtgtctt ctggggggca gaaccaattg
1921 gaaggaagaa agggacccct ctccagtcct ggctccttcc tacatcctgg gctcctgaag
1981 aagctgtctt cccattttcc atgcactgtg cttatgtgtg gtggactgca gagctgcttc
2041 cacttacagg agagctgata atttgttagc tggaacctat tcacttccga gattcagaca
2101 tagccatgct ggtggccttc tgaatcactg catggatgtc ccaggaggca gctctcccca
2161 cacagcagca cagccatcac aggattcctt gtgtagaaat gattcccagt ctagttacca
2221 acagctagtc taggagtaat tgaatggccc tatggcacag ttccacccac agagtggtga
2281 atctctcagc caaggaggga aagaaaagga agaactcttg actatttaga ttctagttaa
2341 atatctggaa tcttagcagt cactacatta tctcagcaga gagactttaa ttaaactgat
2401 ttgtttccaa tgtcgggttc acttaaagga tttgacttac caccagagca tagaaaagca
2461 tgcaaggaag accagatggg cttagcattg ggaagacaga gggcaaggag gcgatagatg
2521 gatatagaag catttctctg caggatacca gttcaggccc caccattcct gccaaggcca
2581 ttacatccca caaacccaaa tacaaagcag ctgacttccc tggatcttcc ccccactcct
2641 cacacctcac atgtccgagg agctgccttc attcaggcgg gtagctgcac tgggcatggg
2701 gtggtggtgg gagcttaccg ccacctattc aagctctcag ctactcctga aacgggcaga
2761 gatgatgaac agaagtgtat gtaaatacag cagctagtgg gagagcacca gttgggccta
2821 atcctgcctc atcattcttg gcaggaatct gcaaatggaa acattgtgag tatcagcaat
2881 ctgggaagtg acagggttaa taactccttc ccagaagctg tatcatgaga ttttgagggg
2941 accgagccct gttacatgga tgtgaacagt gaggatcaga ggttttatca gaacacatta
3001 tttttttcta ccaactctcc agagcgtgag tataggagtg ccatgagctt tttactcagc
3061 agttttgtaa actctgtata taaaatcatt aaccacacat tgtgggtgat gggaagacga
3121 tttcagctga cagagttaat ggcaaccaat aatggtggcc tgtagctgct aagagcttca
3181 cgcaggtttg gcctgggctt tcactgttgg tgaatttaga gtgtcctttt aggtggggcg
3241 gctattctaa aagtgtcttt ctatcactgt taaggggggc ggaaagtgag gttcgaggat
3301 gacgtaggta actctcccct cccaagtcca tgttccaagt ggctatgtaa agcaagatga
3361 tacagaaagc tgctctaaaa tctcactgag tgatttcacc ttcgcctact atgaaatgtc
3421 tcatcagacc tgacatgtct gagataacca aggtgattca ggatttgatc aaaagaagtc
3481 tagtaagaat taattacaca gaagcctcct ttcatttcta tgggccaaac aaaggccatg
3541 gataacccta cccgctttat gtcattaccc attgggaaac acaatggcta cttctgttag
3601 ggtacattga ccttggtcaa gcatcttaaa gaaggcaacc ctaattgaga gctgtcttgg
3661 ctaatactct gcaccacaat tgtgatgtcc tagtcctacc actagagggc atggtacagc
3721 ctggcaaaag ttaaaagggg tgtggcagct cccatcaggt ctggaggtgg tctataagca
3781 cagttgacag ttgtgcattg ggatgggtgg agaaagacga caagagagca gagaatctgc
3841 tgatgtggct gcgcttactt ttagtgactt tatgtactta tattaacagc tggaaatagg
3901 ttgttgggtt ttgagcaggc tgttatagtg aggaatgttc atttttaaat gttcctaaca
3961 gattttgctt ttgaaaaatg cttgttacat gaataatttg tggaccaggg attgcttttc
4021 tgaaggcagt atagggaaca tgaatattca agatgaaata caaaaattat gtttaagggt
4081 catagtgtat aagtagcttc ctaggaaacc atttgtgtat cttttctgac tgggatgggg
4141 gctgagcatg cttgtgcaga aagaagccat agcaagaaag gacagaatct ctcccccact
4201 cccttgcccc ataaccaaac ataagctagc tagtcttgtc taatagatgg gatttactat
4261 aggtgaagat agccatcata ttcaaggaca gaagctctgg caggagtaaa ttagcaaagc
4321 agaaatagta ccctttcatt cttagaggtg ctttgaaatt ttaggtagaa tataatcgaa
4381 attatggagg ttccttagtg ctcaataata taagacctgt tgttattaga acgagtcttt
4441 cttataaact aacagagcag gtatatgcct gttagatctt agctgtgggg ttcctttact
4501 attgggtgaa tcattaggta taaaaaataa tcatcaacca ggcaaattac tttgcttcct
4561 agctgatgtc atcccacatt ggtacaggtg ttattcagta ctgggtggtt cagcagggaa
4621 gccaggtggg accagtgtgt ctgtcatgaa accactaact gcattcctga ctgaagagcc
4681 atctgtcatt tattggggaa ggtcttcagt tgagctctca gccttagtaa ggaagcacgt
4741 ggaggaggga cggaggaggt tcccttgctg ggcatgcttc gtagagggcc aggagcagca
4801 ggtcatgtgc acatgccgtt gcagcacaag cttatgcttc ccgtagccgt ggcttttcat
4861 tctgcacagt cccaggtccc agctcccctc ttatggtttc tgtcataatg tgctttatct
4921 gattgactcc aaacatcccg aaatgtcacc tgcagatttc tcgtgggaac caatatgtac
4981 atgtttgcaa ttatgctgtg agaatttaaa tgtgttagat ggaaaatgct attggcaggg
5041 aataataata aaaaaaaaag aaaatcattc tgtttcctgc agtgggaact ggccatgtag
5101 tcttaacagt cttttgtaca aatatctaca aagcagataa tatccctatc cagtgcttgc
5161 ccttggaatt gtctctaaat gcatcaagca tacaataaaa aaaactgaaa tcaaaaaaaa
5221 aaaaaaaa
//