LOCUS BC040354 4130 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens caldesmon 1, mRNA (cDNA clone MGC:21352
IMAGE:4753285), complete cds.
ACCESSION BC040354
VERSION BC040354.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4130)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4130)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Cleaver, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: p Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44680106.
FEATURES Location/Qualifiers
source 1..4130
/db_xref="H-InvDB:HIT000052378"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21352 IMAGE:4753285"
/tissue_type="Skin, squamous cell carcinoma"
/clone_lib="NCI_CGAP_Skn4"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..4130
/gene="CALD1"
/gene_synonym="CDM"
/gene_synonym="H-CAD"
/gene_synonym="L-CAD"
/gene_synonym="MGC21352"
/gene_synonym="NAG22"
/db_xref="GeneID:800"
/db_xref="HGNC:HGNC:1441"
/db_xref="MIM:114213"
CDS 202..1818
/gene="CALD1"
/gene_synonym="CDM"
/gene_synonym="H-CAD"
/gene_synonym="L-CAD"
/gene_synonym="MGC21352"
/gene_synonym="NAG22"
/codon_start=1
/product="caldesmon 1"
/protein_id="AAH40354.1"
/db_xref="GeneID:800"
/db_xref="HGNC:HGNC:1441"
/db_xref="MIM:114213"
/translation="MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRR
ARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTTTNTQVEGDDEAAFLERLAR
REERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERY
EIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIKDEKIKKDKE
PKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQVE
AGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQE
EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIE
ERAEFLNKSVQKSSGVKSTHQAAIVSKIDSRLEQYTSAIEGTKSAKPTKPAASDLPVP
AEGVRNIKSMWEKGNVFSSPTAAGTPNKETAGLKVGVSSRINEWLTKTPDGNKSPAPK
PSDLRPGDVSSKRNLWEKQSVDKVTSPTKV"
BASE COUNT 1406 a 762 c 916 g 1046 t
ORIGIN
1 ctgtgctcct gcttaaagaa atcagtcctt cctttccgac ttagtcctcg ggaagaagtt
61 tcagactaca aggtatcatt ggaacatttc aagatcatca aatcaaattc cacagggatt
121 ggtgaccaac cagaaggctc agacatctga ttgctgacct gtccagacat catctggtct
181 ccctgaacct gaaatcacac catggatgat tttgagcgtc gcagagaact tagaaggcaa
241 aagagggagg agatgcgact cgaagcagaa agaatcgcct accagaggaa tgacgatgat
301 gaagaggagg cagcccggga acggcgccgc cgagcccgac aggaacggct gcggcagaag
361 caggaggaag aatccttggg acaggtgacc gaccaggtgg aggtgaatgc ccagaacagt
421 gtgcctgacg aggaggccaa gacaaccacc acaaacactc aagtggaagg ggatgatgag
481 gccgcattcc tggagcgcct ggctcggcgt gaggaaagac gccaaaaacg ccttcaggag
541 gctctggagc ggcagaagga gttcgaccca acaataacag atgcaagtct gtcgctccca
601 agcagaagaa tgcaaaatga cacagcagaa aatgaaacta ccgagaagga agaaaaaagt
661 gaaagtcgcc aagaaagata cgagatagag gaaacagaaa cagtcaccaa gtcctaccag
721 aagaatgatt ggagggatgc tgaagaaaac aagaaagaag acaaggaaaa ggaggaggag
781 gaagaggaga agccaaagcg agggagcatt ggagaaaatc agatcaaaga tgaaaagatt
841 aaaaaggaca aagaacccaa agaagaagtt aagagcttca tggatcgaaa gaagggattt
901 acagaagtta agtcgcagaa tggagaattc atgacccaca aacttaaaca tactgagaat
961 actttcagcc gccctggagg gagggccagc gtggacacca aggaggctga gggcgccccc
1021 caggtggaag ccggcaaaag gctggaggag cttcgtcgtc gtcgcgggga gaccgagagc
1081 gaagagttcg agaagctcaa acagaagcag caggaggcgg ctttggagct ggaggaactc
1141 aagaaaaaga gggaggagag aaggaaggtc ctggaggagg aagagcagag gaggaagcag
1201 gaggaagccg atcgaaaact cagagaggag gaagagaaga ggaggctaaa ggaagagatt
1261 gaaaggcgaa gagcagaagc tgctgagaaa cgccagaaga tgccagaaga tggcttgtca
1321 gatgacaaga aaccattcaa gtgtttcact cctaaaggtt catctctcaa gatagaagag
1381 cgagcagaat ttttgaataa gtctgtgcag aaaagcagtg gtgtcaaatc gacccatcaa
1441 gcagcaatag tctccaagat tgacagcaga ctggagcagt ataccagtgc aattgaggga
1501 acaaaaagcg caaaacctac aaagccggca gcctcggatc ttcctgttcc tgctgaaggt
1561 gtacgcaaca tcaagagtat gtgggagaaa gggaatgtgt tttcatcccc cactgcagca
1621 ggcacaccaa ataaggaaac tgctggcttg aaggtagggg tttctagccg catcaatgaa
1681 tggctaacta aaaccccaga tggaaacaag tcacctgctc ccaaaccttc tgacttgaga
1741 ccaggagacg tatccagcaa gcggaacctc tgggaaaagc aatctgtgga taaggtcact
1801 tcccccacta aggtttgaga cagttccaga aagaacccaa gctcaagacg caggacgagc
1861 tcagttgtag agggctaatt cgctctgttt tgtatttatg ttgatttact aaattgggtt
1921 cattatcttt tatttttcaa tatcccagta aacccatgta tattatcact atatttaata
1981 atcacagtct agagatgttc atggtaaaag tactgccttt gcacaggagc ctgtttctaa
2041 agaaacccat gctgtgaaat agagactttt ctactgatca tcataactct gtatctgagc
2101 agtgatacca accacatctg aagtcaacag aagatccaag tttaaaattg cctgcggaat
2161 gtgtgcagta tctagaaaaa tgaaccgtag tttttgtttt tttaaataca gaagtcatgt
2221 tgtttctgca ctttataata aagcatggaa gaaattatct tagtaggcaa ttgtaacact
2281 ttttgaaagt aacccatttc agatttgaaa tactgcaata atggttgtct ttaaaaaaaa
2341 aaaaagaaat gtactgttaa ggtattactt tttttcatgc tgatgattca tatctaaatt
2401 acattattat gttagctgac agtggtactg attttttagg ttggttgttt tgtggatttc
2461 tttagtagtg atagtagcct gaaccacatt ttagataact caattatgta tgtatgtgca
2521 tacacatata caaacacact aatggtagaa tgctttttta tgtgctagac tattatattt
2581 agtagtatgt cattgtaact agccaatatc acagcttttg aaaaattaaa aaatcacact
2641 atattaatat ttcatatttg ccaacagaaa catggcagat aggtatcaat atgttttcaa
2701 tgcctgatga cctataagaa gaaagtattg aaaagaagag agattagaac tgttagaagg
2761 agttgaaatt ttctaaaaga catagtattt agtttataat taaatgcatt cttgaagtcc
2821 agtgtgaatt ttattaatgc tatcatctcg accaagctca aagcctactt attagaaaca
2881 atgaagttca caataggtca taaggtctct tccttttcta aaattgaaag acaagaaatt
2941 tagtgccaat attgtacaga cagaaattcc atgtatgagt ctcaacaaag actacctttg
3001 gctaaatgtc tagaagcaga gaagtaaagt gagcaaaatc cagtgttgag gagtcatgac
3061 agtactttga tctttatata ctctgaagca tttcttcaaa cttttctact tttatttgtc
3121 attgatacct gtagtaagtt gacaatgtgg tgaaatttca aaattatatg taacttctac
3181 tagttttact ttctccccca agtctttttt aactcatgat ttttacacac acaatccaga
3241 acttattata tagcctctaa gtctttattc ttcacagtag ataatgaaag agtcctccag
3301 tgtcttggca aaatgttcta gtatagctgg atacatacag tggagttcta taaactcata
3361 cctcagtgga cttaaccaaa attgtgttag tctcaattcc taccacactg agggagcctc
3421 ccaaataact attttcttat ctgcagtatt cctccagaag agctaaccag ggcagggctg
3481 gcatgagaag tgacatctgc gttacaaagt ctatcttcct cataagtctg taaagagcaa
3541 ttgaatcttc tagctttagc aaacctaagc caaaggaagg aaagccacga agaatgcaga
3601 agtcaaaccc tcatgacaaa gtaggcacaa gtctacaata agctaaatca gaatttacaa
3661 atacaagtgt cccaggtagc attgactccc gtcattggag tgaaatggat caaagtttga
3721 attaaggcct atggtaaggt aacattgctt tgttgtactt ttgaacaaga gctcctcctg
3781 atcactatta catatttttc tagaaaatct aaagttcaga agagaatgta tcactgctga
3841 cttttattcc aatatttgga tggagtaagt tttagggtag aattttgttc agtttggatt
3901 taatcttttg aaaagtaaat tccttgttta ctggtttgac tataattctc tgttatcttt
3961 acgaggtaaa actgcaagct gactagcatg ttctgtgaat ctgccattcc taaaaatttt
4021 ataaacactt gatacttttc actgataatg gatcgctcca ataaacatat attgtgaaaa
4081 tgcatccaca ataaatggaa ttccttcctg caaaaaaaaa aaaaaaaaaa
//