LOCUS BC040301 2850 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens PAS domain containing 1, mRNA (cDNA clone MGC:42664
IMAGE:4826573), complete cds.
ACCESSION BC040301
VERSION BC040301.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2850)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2850)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: p Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27735094.
FEATURES Location/Qualifiers
source 1..2850
/db_xref="H-InvDB:HIT000052369"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42664 IMAGE:4826573"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2850
/gene="PASD1"
/db_xref="GeneID:139135"
/db_xref="HGNC:HGNC:20686"
CDS 144..2465
/gene="PASD1"
/codon_start=1
/product="PAS domain containing 1"
/protein_id="AAH40301.1"
/db_xref="GeneID:139135"
/db_xref="HGNC:HGNC:20686"
/translation="MKMRGEKRRDKVNPKSSQRKLNWIPSFPTYDYFNQVTLQLLDGF
MITLSTDGVIICVAENISSLLGHLPAEIVGKKLLSLLPDEEKDEVYQKIILKFPLLNS
ETHIEFCCHLKRGNVEHGDSSAYENVKFIVNVRDICNEFPVVFSGLFSSHLCADFAAC
VPQEDRLYLVGNVCILRTQLLQQLYTSKAVSDEAVLTQDSDEEPFVGELSSSQGQRGH
TSMKAVYVEPAAAAAAAAISDDQIDIAEVEQYGPQENVHMFVDSDSTYCSSTVFLDTM
PESPALSLQDFRGEPEVNPLYRADPVDLEFSVDQVDSVDQEGPMDQQDPENPVAPLDQ
AGLMDPVDPEDSVDLGAAGASAQPLQPSSPVAYDIISQELELMKKLKEQLEERTWLLH
DAIQNQQNALELMMDHLQKQPNTLRHVVIPDLQSSEAVPKKQQKQHAGQVKRPLPHPK
DVKCFCGLSLSNSLKNTGELQEPCVAFNQQQLVQQEQHLKEQQRQLREQLQQLREQRK
VQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQMLQKEPEEEQQKQQ
LQEQPLKHNVIVGNERVQICLQNPRDVSVPLCNHPVRFLQAQPIVPVQRAAEQQPSGF
YQDENCGQQEDESQSFYPEAYQGPPVNQLPLIDTSNSEAISSSSIPQFPITSDSTIST
LETPQDYIRLWQELSDSLGPVVQVNTWSCDEQGTLHGQPTYHQVQVSEVGVEGPPDPQ
AFQGPAAYQPDQMRSAEQTRLMPAEQRDSNKPC"
BASE COUNT 813 a 652 c 733 g 652 t
ORIGIN
1 atttccagac tttccgggcg cccaccaggc tcccgggctc tcaccggaga ccacagggag
61 gagcttcaag gtaccccaag tccctgcggc ctccagcagt gaagagttcc acaagggagt
121 cttcctacgt cactgaataa tgaatgaaga tgagagggga aaagagaaga gacaaggtca
181 atccaaaaag ctctcaaagg aaattaaact ggattccatc atttcctacc tatgattact
241 tcaaccaagt gacgctacag ttattagatg gctttatgat tacactgagc acagatggag
301 tgatcatttg tgtggctgaa aacatctctt ctcttcttgg acatttacca gctgagattg
361 tgggcaaaaa attattaagc cttctgcctg atgaagagaa agatgaagtc taccaaaaga
421 ttattctcaa atttccttta ctaaactcag aaacacatat tgaattttgc tgtcatttaa
481 aaagaggaaa tgtcgaacat ggtgatagtt ctgcttacga aaacgtgaaa tttattgtga
541 atgtaagaga tatttgtaat gagtttcctg tggtctttag tggcttgttt tccagccacc
601 tctgtgctga ctttgctgca tgtgttcctc aggaggatcg gctttatctt gtgggaaatg
661 tttgcattct caggactcag ctcctgcagc aactttacac ttcaaaggca gtcagtgatg
721 aagctgtact tacacaagat tcagatgagg aaccttttgt gggagagctc agtagctctc
781 aaggtcaaag aggacacact agcatgaaag ccgtgtacgt tgaacccgct gctgctgctg
841 ctgctgctgc tatctcagac gaccaaattg atattgcaga ggttgagcag tatggaccac
901 aagaaaacgt tcacatgttt gtagattctg attcaactta ttgctccagt acagttttcc
961 tggatactat gcctgaatct ccagccttat ccttgcaaga ctttcgaggt gagcctgagg
1021 tgaatccatt gtacagggca gacccagtgg acctggagtt ctcggtggat caggtggact
1081 cagtggacca ggagggccca atggaccagc aggacccaga gaacccagtt gccccgttgg
1141 accaggcagg cctgatggat ccagtggatc cagaggactc agtggacctg ggggctgctg
1201 gcgcaagtgc tcagccatta cagccatcat caccagttgc atatgacatc attagccagg
1261 aactggaact gatgaagaag ttgaaggagc agctagaaga gaggacttgg ttgctgcatg
1321 atgccatcca aaaccagcag aatgcattgg aattgatgat ggatcacctt cagaagcagc
1381 caaacacatt acgccacgtt gtcattcctg atctccaatc ttcggaggca gtgcccaaga
1441 aacaacagaa acaacacgct gggcaagtga agcggcctct cccacatccc aaggacgtca
1501 agtgtttctg tggtttatct ttatccaact ctctcaaaaa cactggggag cttcaggagc
1561 cttgtgttgc cttcaaccag cagcaactgg tgcagcaaga acaacacctg aaggagcagc
1621 agcggcagct gcgggagcag ctgcaacagc tgagagagca aaggaaggtg cagaagcaga
1681 agaagatgca ggagaagaag aagctgcagg agcagaaaat gcaggagaag aagaagctgc
1741 aggagcagag gcggcaaaag aagaagaagc tacaggagcg gaagaagtgg caggggcaga
1801 tgctacagaa agagccagag gaggagcagc agaagcagca gctgcaagag cagccactga
1861 agcataatgt catcgtgggg aatgagaggg tgcagatatg cctgcaaaac ccacgtgacg
1921 tatctgtgcc cctctgcaat caccctgtta gatttttaca ggcccaaccc attgttcctg
1981 tccagagagc agctgaacaa cagccctctg gcttctatca agatgaaaac tgtgggcaac
2041 aggaagatga gagtcaaagt ttttatcctg aggcgtatca agggcccccc gtgaaccagc
2101 tgccattgat agatacctca aactctgagg caatttcttc ttccagcatt cctcagtttc
2161 ccataacttc agactcaacc ataagcaccc tggagacccc acaggattac atccggcttt
2221 ggcaagagtt gtctgattca ctcggtcctg ttgtccaagt gaacacttgg tcttgcgatg
2281 agcagggcac cctgcacggc caacccacct accatcaggt gcaagtttct gaggtaggag
2341 tcgagggacc tcctgatcca caggctttcc aaggccctgc tgcataccag ccagaccaga
2401 tgagatctgc ggagcagacc agattgatgc ctgcagagca acgtgactca aataagccgt
2461 gctaacagta ctttcatgac cagtgatgag gggaaatggg gggagggggc aggccaatga
2521 ggtctgcatg gccaggggac cttcaaggtg cgtaaagtcc cttggggtag ggtttagtgg
2581 gtagagactt atttgtttcc tgataggtta tgtttgtaat tgtttgttaa gcacagcctg
2641 tttcttggaa gttatgctgt agaggcagcc tgtgatccgt agtatgctag ggtgtgacag
2701 cagccagcca cagctggatc tgatgtcttg tctgccccgc ccagctttgc atatccatgt
2761 tctaccacag gaaggtggcc tgccaagagt ctgctcaaag ttttcaacat aaagaataaa
2821 gaaaaaaaaa atgcaaaaaa aaaaaaaaaa
//