LOCUS BC040198 3150 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens shadow of prion protein homolog (zebrafish), mRNA
(cDNA clone MGC:42296 IMAGE:4816858), complete cds.
ACCESSION BC040198
VERSION BC040198.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3150)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3150)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 70 Row: o Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61676081.
FEATURES Location/Qualifiers
source 1..3150
/db_xref="H-InvDB:HIT000096063"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42296 IMAGE:4816858"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3150
/gene="SPRN"
/gene_synonym="bA108K14.1"
/gene_synonym="FLJ41197"
/db_xref="GeneID:503542"
/db_xref="HGNC:HGNC:16871"
CDS 118..573
/gene="SPRN"
/gene_synonym="bA108K14.1"
/gene_synonym="FLJ41197"
/codon_start=1
/product="shadow of prion protein homolog (zebrafish)"
/protein_id="AAH40198.1"
/db_xref="GeneID:503542"
/db_xref="HGNC:HGNC:16871"
/translation="MNWAPATCWALLLAAAFLCDSGAAKGGRGGARGSARGGVRGGAR
GASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLED
EEDGVPGGNGTGPGIYSYRAWTSGAGPTRGPRLCLVLGGALGALGLLRP"
BASE COUNT 606 a 1087 c 941 g 516 t
ORIGIN
1 agcggggctg agggtccgcg ccgccgcccg cccgctcctt cccgctcggc cgcggcctca
61 gggacggata ctccagcgcg cggttccaac cgaggcccgt ggtttagccc cacgaagatg
121 aactgggcac ccgcaacgtg ctgggctctg ctactggcgg ccgccttcct ctgcgacagc
181 ggcgcagcca agggcggccg cggaggtgcg cggggcagtg cccggggagg ggtccgcggg
241 ggcgcgcgcg gggcctcgag ggtgcgcgtg aggccggcgc agcgctacgg tgccccgggt
301 tcctccctgc gcgtggctgc cgccggggcg gcagccgggg cggcggcggg agcggccgcg
361 ggcctggcgg cgggctcggg ctggagaagg gccgcgggac ccggggaacg cggcctggag
421 gacgaggagg acggggtgcc cggaggcaac gggacaggcc ccggcatcta cagctaccgg
481 gcgtggactt cgggcgctgg acccacgcgc ggcccgcgtc tctgtctcgt gctgggcggc
541 gccctcggag ccctggggct gctgcggccc taggcctggc tgggctcggg gaccacatct
601 ggcccccggc ccacgccatc ccccaggatc ctccggcctg ggctccccct tcctcccttg
661 cccacggtct tggagcccca ctgggtgcag gagctgctgg ctgtccctgt ggacccgcca
721 tccaccgtcc tgcccacgcc gcctcagcct gccacctccc acctagagga gaccatgggc
781 cctgccccac ccactccagg atgttagggt cccctcagcc aaaaaggcag ctgcctgtgg
841 ctcctgtacc aaccgcccag ccacgctcca tcgccgccca aagggaggtg ccaaggccag
901 gaacccaagc caccccggct cccctcgcct gcccaggggc cgtggtgact cacgggcagg
961 gaggctacat caggctggtt ctgccactga gcccctgagg aatctgaccc tccccaaaag
1021 aagcagtgaa atggaccaaa ggacttaaga atttgggggg aagtgaggga aaaacgttag
1081 gtgctaacca cctgcccaga agagtggatc tcacagccca ggaacattcc caagcaggaa
1141 aaccgtccgt ccgaggaacg tccatcctgg ctctctgcgg ctggtgggaa aacacaccct
1201 gccctgaggg gctgtccagg ccttctcccc cacaccctca ggccgagatc cgtgagagac
1261 ccactttgct ccaacaactt gaaacaagtc actttaccct ccttaggacc cattttgggg
1321 gggaaaaacc aacacattcc agagctttcc aagtcctttg aacttcaggt tcacattcag
1381 ggatcacaca gttctgcctg ttctcagggc acagcaactg ccaatcccgc tgaagaggcc
1441 tccctgggca cagcacaggc tgcacggtgc acgcatttcc ctgaaggcag ccccttcttc
1501 ggaagcagct gttccaggcc tcggaacagg gtctgggtat ccgcgtggtg ggctggcagc
1561 tgacggcctg ctcagtggag ccaggagcta actcagaccc caaagcaagc agggggccag
1621 tggcggggcc cagcgcccag caggacaccc atgcaagagg ctgagccccc caacatccaa
1681 ggacaggaga gacatggagt ggcgctggac agtcacgaca aggacttgcc tccagcactg
1741 gacacacctg tgttaagacc agccctctgc ttcccagtcc cgccagcctg gggcatcctc
1801 catgggctca gcactgagag gtcttgggtc tgccacgttc tctagctctc cagtcaccca
1861 ctcatccagg gtaggagggg ttctccctgc cccccccccc gtggccttgg gatctcaccc
1921 tctccatgtc ctggtgacag cctcgccctc agccggactg catccctcct gggcctgagc
1981 ctcgggactc agtggacacc aaagtcaaga ccagcaccca ccacgggccc tgccagcctc
2041 tgccttcccc agctggcctg ggttctggcc tgggtgagga tctggaagct gttggcagga
2101 ctcaaccaag cactgctctc tagctccagg gcactaagcc acaggaggca gcgccctgca
2161 gcctcccgtc cacactgcca gcaatgcccc tggcccagtg agcccagacg ctcctccacc
2221 ccttccagac caagctcaac gcctccaaga ccagcaggcc aaggccaagc cctgccccag
2281 atcctcatag gcagagaagc ccttctgaca tttcccccag gaggcagggg gtggtctgag
2341 tctcctcaca gcagagagac ccaccggagc cacctcaact ttgcagatgc ccacatggaa
2401 aatgggctga gctgcaccag accctcacac accacagcac tgcaagctga tggaatgttc
2461 cagttatgat ggacacttcg tgatctgcaa tgactgttga ttcagcacat tagcatctga
2521 cacagccaac ctgaatactt cctgccccag gcggtcaggg ttatggcacg atgcaggtgg
2581 cactcagggg ctaacttcag gctgatgagt gtgtggggta tggggcagca gaggcagcca
2641 gccagcaaag aggggccact gagcaccagg gccctggtgg aggctgctgt gggacggtca
2701 ggccaccacc gcaaagaggc agccggagct tctgcacagg atgtccctgg ccccaggtcc
2761 tgcagcacct tagtccatac taccagcccc acccaccttc cttcctcttc cctcttctag
2821 gacacaggct gtggacccct tcaggtgcac tataatgggg ctggaggggc ccccacatct
2881 ctcagcccca ctaatgcaga atcccactac ccgtgagcta gaaggtgctc agaggccagg
2941 ggtctctact gcccatgccg ggcggccttc cagtcattgc acagcaaagc catgtgcagg
3001 gcgtccccct caaccctgcc ctgaacatgc cccagggcac tgaggggcga agccagtgct
3061 tgggctctgc tgctgggagt ctctggtctg tgtctgtgtg tgcctgtaag tgtgaaataa
3121 acctctctga tggcaaaaaa aaaaaaaaaa
//