LOCUS BC040176 1600 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens LY6/PLAUR domain containing 6B, mRNA (cDNA clone
MGC:42014 IMAGE:4794338), complete cds.
ACCESSION BC040176
VERSION BC040176.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1600)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1600)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC040176.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 70 Row: c Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255209.
FEATURES Location/Qualifiers
source 1..1600
/db_xref="H-InvDB:HIT000052338"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42014 IMAGE:4794338"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1600
/gene="LYPD6B"
/db_xref="GeneID:130576"
/db_xref="HGNC:HGNC:27018"
CDS 402..1025
/gene="LYPD6B"
/codon_start=1
/product="LY6/PLAUR domain containing 6B"
/protein_id="AAH40176.2"
/db_xref="GeneID:130576"
/db_xref="HGNC:HGNC:27018"
/translation="MLLITLSANLFTVPERSLTTTFSFSRYKSSDRPAHKVSMLLLCH
ALAIAVVQIVIFSESWAFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA
EDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCHHSRDSEHTECRSCCE
GMICNVELPTNHTNAVFAVMHAQRTSGSSAPTLYLPVLAWVFVLPLL"
BASE COUNT 398 a 436 c 409 g 357 t
ORIGIN
1 acttcctgag ccgggctggc tgggtgggaa caggctcctt gccgcctccc cagcgctggc
61 cactaccaca ctgccgcccg cctgggcctc ctttcaacct cgtggtggag ccctgcggtt
121 tcccagcgga gccgggcccg gggctgctcc ctcgcgggcg aggctcacct gtcccggccc
181 ggccccctcc cgcgccccag gtggttcagg gcggggagga gccgcgcccc gccccgcgcg
241 gtagcagcca acgccggccc caggcgggtg cgctgggagc ctgggccggg agccgggtga
301 gggcgccgag aggctcggtg ggcgcgggcg gcgagatatg ccacacttct gcctgctgtt
361 ggcaaccctc ctggactagg ctgctcttgt taatcacatg gatgttgctg attactctga
421 gtgcaaacct tttcactgtt ccagagagga gcctgacaac cacattctcc ttctcaagat
481 ataagagttc ggaccgccca gcacacaagg tcagcatgct gctcctctgt cacgctctcg
541 ctatagctgt tgtccagatc gttatcttct cagaaagctg ggcatttgcc aagaacatca
601 acttctataa tgtgaggcct cctctcgacc ctacaccatt tccaaatagc ttcaagtgct
661 ttacttgtga aaacgcaggg gataattata actgcaatcg atgggcagaa gacaaatggt
721 gtccacaaaa tacacagtac tgtttgacag ttcatcactt caccagccac ggaagaagca
781 catccatcac caaaaagtgt gcctccagaa gtgaatgtca ttttgtcggt tgccaccaca
841 gccgagattc tgaacatacg gagtgtaggt cttgctgtga aggaatgatc tgcaatgtag
901 aattacccac caatcacact aatgcagtgt ttgccgtaat gcacgctcag agaacatctg
961 gcagcagtgc ccccacactc tacctaccag tgcttgcctg ggtctttgtg cttccattgc
1021 tgtgatgcca ccattcctag gagaggcaga gaccagcctc taaagcacaa gccaaaaact
1081 gtgtgaacgg tgaactttgg agtgaagatc aatcttgcac ttggtgaaga gtgcacattg
1141 gacctcaagg cgaaagccag tggtttgctt ggataaaatg ttcccgcatg aggccacagg
1201 actgaggatg ggaatttggc agggcctgag aagatggtct gacttccagg cttcctggtc
1261 aaagagagct acgtttgggc agttctgcag agaggatcct ggcaactagt cccacctgac
1321 taggccttta gctgaaagga tttcttgacc tccttgactg cctcagaggc tgccaggtca
1381 aaccctcttg tttatgtgat tagctcagag catctctatg aaatctaacc cttcccctca
1441 tgagaaagca gttttcccca ccaacagcat agtcaatgag aaaggcgact gtacgaagaa
1501 aacttccagt ggaactaata tgaaatctat ttgcaaatta tggggggaaa taaagctttt
1561 aaattataca atgaaaaaaa aaaaaaaaaa aaaaaaaaaa
//