LOCUS BC040126 2217 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:48770 IMAGE:5730044), complete cds.
ACCESSION BC040126
VERSION BC040126.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2217)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2217)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: j Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542702.
FEATURES Location/Qualifiers
source 1..2217
/db_xref="H-InvDB:HIT000052325"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48770 IMAGE:5730044"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2217
/gene="TRMT1"
/gene_synonym="FLJ20244"
/db_xref="GeneID:55621"
/db_xref="HGNC:HGNC:25980"
CDS 120..2099
/gene="TRMT1"
/gene_synonym="FLJ20244"
/codon_start=1
/product="TRM1 tRNA methyltransferase 1 homolog (S.
cerevisiae)"
/protein_id="AAH40126.1"
/db_xref="GeneID:55621"
/db_xref="HGNC:HGNC:25980"
/translation="MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPY
GEERPREVQETTVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGI
QIKVPGEKDTQKVVVDLSEQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGL
AASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMY
QHQRVSERFDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSK
YGAMALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAK
VKASASKQALVFQCVGCGAFHLQRLGKASGVPSGRAKFSAACGPPVTPECEHCGQRHQ
LGGPMWAEPIHDLDFVGRVLEAVSANPGRFHTSERIRGVLSVITEELPDVPLYYTLDQ
LSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCWEKECPV
KRERLSETSPAFRILSVEPRLQANFTIREDANPSSRQRGLKRFQANPEANWGPRPRAR
PGGKAADEAMEERRRLLQNKRKEPPEDVAQRAARLKTFPCKRFKEGTCQRGDQCCYSH
SPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID"
BASE COUNT 514 a 665 c 650 g 388 t
ORIGIN
1 ccctacctca tagatatgta ggacatcccc gggcccggaa tgcggctctc tgaccctctc
61 tgtgccctcc cccgcccccc gaaccaggct tggcgggcgg aggcgccagc ggatgtctca
121 tgcaaggatc gtctctgtgg ctaagcctca ctttccgctc cgcccgggtg ctctctagag
181 cccggttttt cgagtggcag tctccagggc tgccgaatac agcagcgatg gagaacggca
241 ccgggcccta cggagaagaa cgtccacgtg aagtccagga gacgacagtc accgaggggg
301 ctgccaaaat cgcctttccc agtgccaacg aggtctttta taacccggtg caggaattca
361 atcgggacct gacatgtgct gtgatcaccg agtttgctcg cattcagctt ggggccaaag
421 gaatccagat caaggttcca ggagagaagg acacgcaaaa agtggtcgtg gacttgtcag
481 agcaagagga ggaaaaggtt gaactgaaag agagtgaaaa cctggcctca ggagaccaac
541 ctcgcacagc ggccgtgggg gagatctgtg aggaaggcct gcatgtgctg gaaggcctgg
601 cagcttcagg cctacgttcc attcgatttg ccctagaggt gcctgggctc agatctgtgg
661 ttgcaaacga tgcctccacc cgggctgtgg atctcatacg ccggaatgtc cagctcaatg
721 acgtggccca cctggtacag ccgagccaag cagatgcccg gatgctgatg taccagcacc
781 agagggtgtc ggagaggttt gacgtcatcg atctggaccc ctatggcagc ccagccacct
841 tcctggatgc agctgtgcag gctgtgagtg aaggagggtt gctgtgtgtg acctgcacag
901 acatggcggt gttggcgggg aacagcgggg agacgtgcta cagcaagtac ggggccatgg
961 ccctcaagag ccgggcctgc cacgagatgg ccctgagaat cgtcctgcac agcctggacc
1021 tccgcgccaa ctgctaccag cgcttcgtgg tgccgctgct cagcatcagc gctgacttct
1081 acgtgcgtgt ttttgtccgt gtcttcaccg gccaggccaa ggtcaaggcc tcagccagca
1141 agcaggcgct ggtgttccag tgtgtgggct gcggggcctt ccaccttcag cgtctcggca
1201 aagcgtcagg agtccccagc ggccgggcca agttctctgc agcctgtggt ccccctgtga
1261 cccccgagtg tgaacactgt gggcaacgac accagcttgg tggccccatg tgggcagagc
1321 ccatccatga cctggatttt gtgggccgtg tcctggaggc tgtgagcgct aaccccggcc
1381 gcttccacac ctcggagcgg atccgagggg tcctgagcgt catcactgag gagctcccgg
1441 acgtgcctct gtactacacc ctggaccagc tgagcagcac catccactgc aacacaccaa
1501 gcctcctgca gttgcggtcg gccctcctcc acgctgactt ccgggtctca ctctcccacg
1561 cctgtaagaa cgctgtgaag acggatgccc ctgcctctgc cctctgggac atcatgcgtt
1621 gctgggagaa ggaatgtccg gtgaaacggg agcgactatc agagactagc ccagcgttcc
1681 gcattctcag tgtggagccc aggctgcagg ccaacttcac catccgggaa gatgccaacc
1741 ccagctcccg acagcgagga ctcaagcgct tccaggctaa cccggaggcc aactggggtc
1801 cccggcctcg tgcccggcca gggggcaagg cggccgacga agctatggag gagagacgca
1861 ggctgcttca gaacaagcgg aaggagccgc cggaagatgt ggcccagcgg gctgcccggc
1921 tcaagacatt tccttgcaag aggtttaagg agggcacctg tcaacgcggg gaccagtgct
1981 gctactccca cagccccccg acacccaggg tttctgctga tgctgcccct gactgtccag
2041 agacctccaa ccagaccccc cctggacctg gggctgccgc tgggccaggc atagactgaa
2101 ccaataaaga gatgtcacgt caccttctcc cgaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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