LOCUS BC039897 2860 bp mRNA linear HUM 10-JUN-2003 DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched), mRNA (cDNA clone IMAGE:5196107), partial cds. ACCESSION BC039897 VERSION BC039897.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2860) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2860) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: d Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: GenomeScan gene prediction, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..2860 /db_xref="H-InvDB:HIT000095944" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5196107" /tissue_type="Brain, adult, 6 pooled whole brains" /clone_lib="NIH_MGC_114" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..2860 /gene="PTPN5" /gene_synonym="FLJ14427" /gene_synonym="PTPSTEP" /gene_synonym="STEP" /db_xref="GeneID:84867" /db_xref="MIM:176879" CDS <1..1792 /gene="PTPN5" /gene_synonym="FLJ14427" /gene_synonym="PTPSTEP" /gene_synonym="STEP" /codon_start=2 /product="PTPN5 protein" /protein_id="AAH39897.1" /db_xref="GeneID:84867" /db_xref="MIM:176879" /translation="IHTGTDTSRDTRRHTHTRAHPPASLPACSPAPGARSGRSERENH AADDSEGGALDMCCSERLPGLPQPIVMEALDEAEGLQDSQREMPPPPPPSPPSDPAQK PPPRGAGSHSLTVRSSLCLFAASQFLLACGVLWFSGYGHIWSQNATNLVSSLLTLLKQ LEPTAWLDSGTWGVPSLLLVFLSVGLVLVTTLVWHLLRTPPEPPTPLPPEDRRQSVSR QPSFTYSEWMEEKIEDDFLDLDPVPETPVFDCVMDIKPEADPTSLTVKSMGLQERRGS NVSLTLDMCTPGCNEEGFGYLMSPREESAREYLLSASRVLQAEELHEKALDPFLLQAE FFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRG YGGEEKVYIATQGSIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEYWPEEQVAY DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVRE VEEAAQQEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDR GGMIQTCEQYQFVHHVMSLYEKQLSHQSPE" BASE COUNT 628 a 861 c 803 g 568 t ORIGIN 1 catacacact ggcacagaca caagcaggga cacacgcaga cacacgcaca ctcgcgcgca 61 tcctcccgcc agcctgcccg cctgctcgcc ggcgcccgga gcccgctctg gccggagtga 121 gagagagaac cacgctgctg atgactccga gggaggggcc ctggacatgt gctgcagtga 181 gaggctaccg ggtctccccc agccgatagt gatggaggca ctggacgagg ctgaagggct 241 ccaggactca cagagagaga tgccgccacc ccctcctccc tcgccgccct cagatccagc 301 tcagaagcca ccacctcgag gcgctgggag ccactccctc actgtcagga gcagcctgtg 361 cctgttcgct gcctcacagt tcctgcttgc ctgtggggtg ctctggttca gcggttatgg 421 ccacatctgg tcacagaacg ccacaaacct cgtctcctct ttgctgacgc tcctgaaaca 481 gctggaaccc acggcctggc ttgactctgg gacgtgggga gtccccagtc tgctgctggt 541 ctttctgtcc gtgggcctgg tcctcgttac caccctggtg tggcacctcc tgaggacacc 601 cccagagcca cccaccccac tgccccctga ggacaggcgc cagtcagtga gccgccagcc 661 ctccttcacc tactcagagt ggatggagga gaagatcgag gatgacttcc tggacctcga 721 cccggtgccc gagactcctg tgtttgattg tgtgatggac atcaagcctg aggctgaccc 781 cacctcactc accgtcaagt ccatgggtct gcaggagagg aggggttcca atgtctccct 841 gaccctggac atgtgcactc cgggctgcaa cgaggagggc tttggctatc tcatgtcccc 901 acgtgaggag tccgcccgcg agtacctgct cagcgcctcc cgtgtcctcc aagcagaaga 961 gcttcatgaa aaggccctgg accctttcct gctgcaggcg gaattctttg aaatccccat 1021 gaactttgtg gatccgaaag agtacgacat ccctgggctg gtgcggaaga accggtacaa 1081 aaccatactt cccaaccctc acagcagagt gtgtctgacc tcaccagacc ctgacgaccc 1141 tctgagttcc tacatcaatg ccaactacat ccggggctat ggtggggagg agaaggtgta 1201 catcgccact cagggatcca tcgtcagcac ggtcgccgac ttctggcgca tggtgtggca 1261 ggagcacacg cccatcattg tcatgatcac caacatcgag gagatgaacg agaaatgcac 1321 cgagtattgg ccggaggagc aggtggcgta cgacggtgtt gagatcactg tgcagaaagt 1381 cattcacacg gaggattacc ggctgcgact catctccctc aagagtggga ctgaggagcg 1441 aggcctgaag cattactggt tcacatcctg gcccgaccag aagaccccag accgggcccc 1501 cccactcctg cacctggtgc gggaggtgga ggaggcagcc cagcaggagg ggccccactg 1561 tgcccccatc atcgtccact gcagtgcagg gattgggagg accggctgct tcattgccac 1621 cagcatctgc tgccagcagc tgcggcagga gggtgtggtg gacatcctga agaccacgtg 1681 ccagctccgt caggacaggg gcggcatgat ccagacatgc gagcagtacc agtttgtgca 1741 ccacgtcatg agcctctacg aaaagcagct gtcccaccag tccccagaat gactgcgctt 1801 ctcctacaag gttctctggg cactgcccag cctgagtctc ggccctcacc cagggccctg 1861 cctcgggtcc tgggcctgct ccccgcttcc tccccttcag tcagctccct ctgtcctctg 1921 tcagcctggc ctgaccccta ccctccagca ttgctcttcc tactgtacat attggggagt 1981 ggggggcagg gtcgggaagg gacatgccag gccaggcctg gggccccggg gcctgaccca 2041 caccacgcag accccgggct ccagttttta acgatggttc catcaatacc tgatccagaa 2101 tgtttccgtg ctacactttg tgtcctgctg caatgtgttc tgtctgtcca tccatctctg 2161 ccctctgtac cggacactgt gtctcctcag ccaggaaggg gtaatgagct ccagccccta 2221 agcaaccgga cttgcctgcc tcggcctcac ccgcacttct cccaaaaggc agatgacggg 2281 gagttaggca tggggagctc cagaaggtca ccagagagct ttcagctgag ggagagttct 2341 ctaggttgga gtgggcatca cagccagggt ggcctctggg tgtcagatgc tctcaggagg 2401 gtgcccagcc tgtgaggcac tggcaaggta gggggcagat ggggcatgga gaacccagag 2461 gatctaggcc ctgttgggga ggggagggga gctcaaggtt tgggtgggga ctcagcccag 2521 atctacgtga gacatttttc tgtgtcactg tgggaaagcc ttcccagaag tctcactgcg 2581 tgttgctctg cgtgtgttcc catgtccatg cgtgtgttga gagcccatca ggagggcatg 2641 catgactctt tggcaacatg tattatcttg gagccacgtg tttttattgc tgactttaaa 2701 tatttatccc acggcagaca gagacatttg gtgtcttttt ataattcgct cgtggtcatt 2761 gaatagagca ataaacggag cattttgagc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //