LOCUS       BC039893                1874 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens chemokine (C-X-C motif) ligand 12 (stromal
            cell-derived factor 1), mRNA (cDNA clone MGC:47612 IMAGE:5729604),
            complete cds.
ACCESSION   BC039893
VERSION     BC039893.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1874)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Invitrogen
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 82 Row: i Column: 3
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 40316923.
FEATURES             Location/Qualifiers
     source          1..1874
                     /db_xref="H-InvDB:HIT000052284"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:47612 IMAGE:5729604"
                     /tissue_type="Brain, hippocampus"
                     /clone_lib="NIH_MGC_124"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..1874
                     /gene="CXCL12"
                     /gene_synonym="chemokine"
                     /gene_synonym="PBSF"
                     /gene_synonym="SCYB12"
                     /gene_synonym="SDF-1a"
                     /gene_synonym="SDF-1b"
                     /gene_synonym="TLSF-a"
                     /gene_synonym="TLSF-b"
                     /gene_synonym="TPAR1"
                     /db_xref="GeneID:6387"
                     /db_xref="HGNC:HGNC:10672"
                     /db_xref="MIM:600835"
     CDS             71..340
                     /gene="CXCL12"
                     /gene_synonym="chemokine"
                     /gene_synonym="PBSF"
                     /gene_synonym="SCYB12"
                     /gene_synonym="SDF-1a"
                     /gene_synonym="SDF-1b"
                     /gene_synonym="TLSF-a"
                     /gene_synonym="TLSF-b"
                     /gene_synonym="TPAR1"
                     /codon_start=1
                     /product="chemokine (C-X-C motif) ligand 12 (stromal
                     cell-derived factor 1)"
                     /protein_id="AAH39893.1"
                     /db_xref="GeneID:6387"
                     /db_xref="HGNC:HGNC:10672"
                     /db_xref="MIM:600835"
                     /translation="MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANV
                     KHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK"
BASE COUNT          489 a          469 c          414 g          502 t
ORIGIN      
        1 gccgcattgc ccgctcggcg tccggccccc gacccgcgct cgtccgcccg cccgcccgcc
       61 cgcccgcgcc atgaacgcca aggtcgtggt cgtgctggtc ctcgtgctga ccgcgctctg
      121 cctcagcgac gggaagcccg tcagcctgag ctacagatgc ccatgccgat tcttcgaaag
      181 ccatgttgcc agagccaacg tcaagcatct caaaattctc aacactccaa actgtgccct
      241 tcagattgta gcccggctga agaacaacaa cagacaagtg tgcattgacc cgaagctaaa
      301 gtggattcag gagtacctgg agaaagcttt aaacaagtaa gcacaacagc caaaaaggac
      361 tttccgctag acccactcga ggaaaactaa aaccttgtga gagatgaaag ggcaaagacg
      421 tgggggaggg ggccttaacc atgaggacca ggtgtgtgtg tggggtgggc acattgatct
      481 gggatcgggc ctgaggtttg ccagcattta gaccctgcat ttatagcata cggtatgata
      541 ttgcagctta tattcatcca tgccctgtac ctgtgcacgt tggaactttt attactgggg
      601 tttttctaag aaagaaattg tattatcaac agcattttca agcagttagt tccttcatga
      661 tcatcacaat catcatcatt ctcattctca ttttttaaat caacgagtac ttcaagatct
      721 gaatttggct tgtttggagc atctcctctg ctcccctggg gagtctgggc acagtcaggt
      781 ggtggcttaa cagggagctg gaaaaagtgt cctttcttca gacactgagg ctcccgcagc
      841 agcgcccctc ccaagaggaa ggcctctgtg gcactcagat accgactggg gctgggcgcc
      901 gccactgcct tcacctcctc tttcaacctc agtgattggc tctgtgggct ccatgtagaa
      961 gccactatta ctgggactgt gctcagagac ccctctccca gctattccta ctctctcccc
     1021 gactccgaga gcatgcttaa tcttgcttct gcttctcatt tctgtagcct gatcagcgcc
     1081 gcaccagccg ggaagagggt gattgctggg gctcgtgccc tgcatccctc tcctcccagg
     1141 gcctgcccca cagctcgggc cctctgtgag atccgtcttt ggcctcctcc agaatggagc
     1201 tggccctctc ctggggatgt gtaatggtcc ccctgcttac ccgcaaaaga caagtcttta
     1261 cagaatcaaa tgcaatttta aatctgagag ctcgctttga gtgactgggt tttgtgattg
     1321 cctctgaagc ctatgtatgc catggaggca ctaacaaact ctgaggtttc cgaaatcaga
     1381 agcgaaaaaa tcagtgaata aaccatcatc ttgccactac cccctcctga agccacagca
     1441 gggtttcagg ttccaatcag aactgttggc aaggtgacat ttccatgcat aaatgcgatc
     1501 cacagaaggt cctggtggta tttgtaactt tttgcaaggc atttttttat atatattttt
     1561 gtgcacattt ttttttacgt ttctttagaa aacaaatgta tttcaaaata tatttatagt
     1621 cgaacaattc atatatttga agtggagcca tatgaatgtc agtagtttat acttctctat
     1681 tatctcaaac tactggcaat ttgtaaagaa atatatatga tatataaatg tgattgcagc
     1741 ttttcaatgt tagccacagt gtattttttc acttgtacta aaattgtatc aaatgtgaca
     1801 ttatatgcac tagcaataaa atgctaattg tttcatggta aaaaaaaaaa aaaaaaaaaa
     1861 aaaaaaaaaa aaaa
//