LOCUS BC039867 1895 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens WD repeat domain, phosphoinositide interacting 1, mRNA
(cDNA clone MGC:49021 IMAGE:6055425), complete cds.
ACCESSION BC039867
VERSION BC039867.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1895)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1895)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC039867.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: o Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059790.
FEATURES Location/Qualifiers
source 1..1895
/db_xref="H-InvDB:HIT000052277"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49021 IMAGE:6055425"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1895
/gene="WIPI1"
/gene_synonym="Atg18"
/gene_synonym="FLJ10055"
/gene_synonym="WIPI49"
/db_xref="GeneID:55062"
/db_xref="HGNC:HGNC:25471"
/db_xref="MIM:609224"
CDS 48..1388
/gene="WIPI1"
/gene_synonym="Atg18"
/gene_synonym="FLJ10055"
/gene_synonym="WIPI49"
/codon_start=1
/product="WD repeat domain, phosphoinositide interacting
1"
/protein_id="AAH39867.1"
/db_xref="GeneID:55062"
/db_xref="HGNC:HGNC:25471"
/db_xref="MIM:609224"
/translation="MEAEAADAPPGGVESALSCFSFNQDCTSLAIGTKAGYKLFSLSS
VEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYSYSSN
ILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGLCALSINHSNSYLAYP
GSLTSGEIVLYDGNSLKTVCTIAAHEGTLAAITFNASGSKLASASEKGTVIRVFSVPD
GQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTETVHIFKLEQVTNSRPEEPSTWS
GYMGKMFMAATNYLPTQVSDMMHQDRAFATARLNFSGQRNICTLSTIQKLPRLLVASS
SGHLYMYNLDPQDGGECVLIKTHSLLGSGTTEENKENDLRPSLPQSYAATVARPSASS
ASTVPGYSEDGGALRGEVIPEHEFATGPVCLDDENEFPPIILCRGNQKGKTKQS"
BASE COUNT 524 a 456 c 456 g 459 t
ORIGIN
1 ggggctgagg tggctgtcgc cggctccgag ctgcggccga gcccccgatg gaggccgagg
61 ccgcggacgc tcccccgggc ggggttgagt cggcgctcag ctgcttctct ttcaaccagg
121 actgcacatc cctagcaatt ggaactaaag ccgggtataa gctgttttct ctgagttctg
181 tggagcagct ggatcaagtc cacggaagca atgaaatccc ggacgtctac atcgtggagc
241 gcctcttctc cagcagcctg gtggtggtag tcagtcacac aaaaccacgg cagatgaacg
301 tgtatcactt caagaaaggc acagagatct gtaattacag ctactccagc aacatcttgt
361 ccataaggct gaaccggcaa aggctgctgg tttgcctaga agagtccatt tatattcaca
421 acattaaaga catgaagctg ttgaagaccc tcctggatat tcctgcaaac ccaacaggtc
481 tatgtgctct ctctatcaac cattccaatt cttacctggc ctatcctgga agcctgactt
541 caggggagat tgtgctttat gatggaaact ccctgaaaac agtctgcact attgctgccc
601 atgagggaac actagctgcc atcaccttca atgcctcagg ctccaaacta gcaagtgcgt
661 ctgaaaaagg cacagtcatc cgggtgttct ctgtccctga tgggcaaaag ctctatgagt
721 tccggagagg gatgaaaagg tatgtgacaa tcagctctct agtgttcagt atggattcac
781 aattcctctg cgcctccagt aacaccgaga cggtacacat cttcaagctg gaacaggtca
841 ccaacagtcg accagaagag ccttcgacct ggagtggcta catgggaaag atgtttatgg
901 ctgctaccaa ctacctccct acccaggtgt cagacatgat gcatcaggac agggcttttg
961 ccactgcacg cttgaacttc tccggacaga ggaacatctg taccctctca acgatccaga
1021 agttgccacg gctgctagtt gcgtcatcca gtggacacct ttatatgtac aatttggatc
1081 ctcaggatgg aggagagtgt gtcttaatca aaacccacag cttgcttggc tcaggaacaa
1141 cagaagagaa taaagaaaat gacctcagac cttccttacc tcagtcttat gcagcgaccg
1201 tagccagacc aagtgcatct tcagcctcca cggtgccagg ttattctgag gacggcgggg
1261 cgctgcgagg agaagttatt cctgaacatg agtttgcgac gggaccagtg tgtcttgatg
1321 atgagaatga gtttcctcct ataatcttgt gccgtggaaa tcagaagggc aaaacgaagc
1381 agtcatgatg agaagcacac ctcagaaatc aggacatccc ccctatcagg tggttttgga
1441 gaaaacaagg aaggcggaag aatggagtgc aattgtgtga gcagaaaggg gggcaggaat
1501 cccgggtgct ccactgctta aaccacagga cctggttaac tcctcaccaa gcttcccacg
1561 accctggttg ccaatgggcg cgggagacat tgtatacaca tcatgctatt taaaatacgt
1621 tcaaactata gtgtaaatgc taattaacca tattggtata taaccggaat tttatattaa
1681 aaggggcctc ctttttaaat atatgccgtg taaaaaatgt acttatagga acatctcttt
1741 gaattgtatt tcttgtatat tacatactta gagagagact cttttagcca ggcaaagtct
1801 tttttggctg tggctggaat aaatcattta ttacttggga gtcccatttt ggacactaat
1861 aataaaatca tggcaatgca aaaaaaaaaa aaaaa
//