LOCUS BC039843 2474 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone
IMAGE:4508075), partial cds.
ACCESSION BC039843
VERSION BC039843.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2474)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2474)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: c Column: 3.
FEATURES Location/Qualifiers
source 1..2474
/db_xref="H-InvDB:HIT000095917"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4508075"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2474
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/db_xref="GeneID:6599"
/db_xref="MIM:601732"
CDS 23..>2474
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/codon_start=1
/product="SMARCC1 protein"
/protein_id="AAH39843.1"
/db_xref="GeneID:6599"
/db_xref="MIM:601732"
/translation="MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWE
SPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFT
KLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLV
QNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEW
LRPVMRKEKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIF
NEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPP
TPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLK
KDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHII
IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL
VPLHLRSPQVPAAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTLAKSKGASAGREWT
EQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLA
YQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKK
VQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEKMEADPDGQQPEKAENKVE
NETDEGDKAQDGENEKKKK"
BASE COUNT 753 a 509 c 656 g 556 t
ORIGIN
1 gtggggacga cgggctgcga cgatggccgc agcggcgggc ggcggcgggc cggggacagc
61 ggtaggcgcc acgggctcgg ggattgcggc ggcagccgca ggcctagctg tttatcgacg
121 gaaggatggg ggcccggcca ccaagttttg ggagagcccg gagacggtgt cccagctgga
181 ttcggtgcgg gtctggctgg gcaagcacta caagaagtat gttcatgcgg atgctcctac
241 caataaaaca ctggctgggc tggtggtgca gcttcttcag ttccaggaag atgcctttgg
301 gaagcatgtc accaacccgg ccttcaccaa actccctgca aagtgtttca tggatttcaa
361 agctggaggc gccttatgtc acattcttgg ggctgcttac aagtataaaa atgaacaggg
421 atggcggagg tttgacctac agaacccatc tcgaatggat cgtaatgtgg aaatgtttat
481 gaacattgaa aaaacattgg tgcagaacaa ttgtttgacc agacccaaca tctacctcat
541 tccagacatt gatctgaagt tggctaacaa attgaaagat atcatcaaac gacatcaggg
601 aacatttacg gatgagaagt caaaagcttc ccaccacatt tacccatatt cttcctcaca
661 agacgatgaa gaatggttga gaccggtgat gagaaaagag aagcaagtgt tagtgcattg
721 gggcttttac ccagacagct atgatacttg ggtccatagt aatgatgttg atgctgaaat
781 tgaagatcca ccaattccag aaaaaccatg gaaggttcat gtgaaatgga ttttggacac
841 tgatattttc aatgaatgga tgaatgagga ggattatgag gtggatgaaa ataggaagcc
901 tgtgagtttt cgtcagcgga tttcaaccaa gaatgaagag ccagtcagaa gtccagaaag
961 aagagataga aaagcatcag ctaatgctcg aaagaggaaa cattcgcctt cgcctccccc
1021 tccgacacca acagaatcac ggaagaagag tgggaagaaa ggccaagcta gcctttatgg
1081 gaagcgcaga agtcagaaag aggaagatga gcaagaagat ctaaccaagg atatggaaga
1141 cccaacacct gtacccaata tagaagaagt agtacttccc aaaaatgtga acctaaagaa
1201 agatagtgaa aatacacctg ttaaaggagg aactgtagcg gatctagatg agcaggatga
1261 agaaacagtc acagcaggag gaaaggaaga tgaagatcct gccaaaggtg atcagagtcg
1321 atcagttgac cttggggaag ataatgtgac agagcagacc aatcacatta ttattcctag
1381 ttatgcatca tggtttgatt ataactgtat tcatgtgatt gaacggcgtg ctcttcctga
1441 gttcttcaat ggaaaaaaca aatccaagac tccagaaata tacttggcat atcgaaattt
1501 tatgattgac acgtatcgtc taaaccccca agagtattta actagcactg cttgtcggag
1561 gaacttgact ggagatgtgt gtgctgtgat gagggtccat gcctttttag agcagtgggg
1621 actcgttaat taccaagttg acccggaaag tagacccatg gcaatgggac ctcctcctac
1681 tcctcatttt aatgtattag ctgatacccc ctctgggctt gtgcctctgc atcttcgatc
1741 acctcaggtt cctgctgctc aacagatgct aaattttcct gagaaaaaca aggaaaaacc
1801 agttgatttg cagaactttg gtctccgtac tgacatttac tccaagaaaa cattagcaaa
1861 gagtaagggt gctagtgctg gaagagaatg gactgaacag gagacccttc tactcctgga
1921 ggccctggag atgtacaagg atgattggaa caaagtgtcg gaacatgttg gaagtcgtac
1981 tcaggatgaa tgcatcctcc actttttgag acttcccatt gaggacccat accttgagaa
2041 ttcagatgct tcccttgggc ctttggccta ccagcctgtc cccttcagtc agtcaggaaa
2101 tccagttatg agtactgttg cttttttggc atctgtggtg gaccctcgcg tggcatctgc
2161 tgcagcaaaa gcggctttgg aggagttttc tcgggtccgg gaggaggtac cactggaatt
2221 ggttgaagct catgtcaaga aagtacaaga agcagcacga gcctctggga aagtggatcc
2281 cacctacggt ctggagagca gctgcattgc aggcacaggg cccgatgagc cagagaagct
2341 tgaaggagct gaagaggaaa aaatggaagc cgaccctgat ggtcagcagc ctgaaaaggc
2401 agaaaataaa gtggaaaatg aaacggatga aggtgataaa gcacaagatg gagaaaatga
2461 aaaaaaaaaa aaaa
//