LOCUS BC039832 1305 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens periphilin 1, mRNA (cDNA clone MGC:48786
IMAGE:6051282), complete cds.
ACCESSION BC039832
VERSION BC039832.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1305)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1305)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: o Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41872367.
FEATURES Location/Qualifiers
source 1..1305
/db_xref="H-InvDB:HIT000052262"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48786 IMAGE:6051282"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1305
/gene="PPHLN1"
/gene_synonym="HSPC206"
/gene_synonym="HSPC232"
/gene_synonym="MGC48786"
/db_xref="GeneID:51535"
/db_xref="HGNC:HGNC:19369"
/db_xref="MIM:608150"
CDS 95..871
/gene="PPHLN1"
/gene_synonym="HSPC206"
/gene_synonym="HSPC232"
/gene_synonym="MGC48786"
/codon_start=1
/product="periphilin 1"
/protein_id="AAH39832.1"
/db_xref="GeneID:51535"
/db_xref="HGNC:HGNC:19369"
/db_xref="MIM:608150"
/translation="MAYRRDEMWSEGRYEYERIPRERAPPRSHPSDESGYRWTRDDHS
ASRQPEYRDMRDGFRRKSFYSSHYARERSPYKRDNTFFRESPVGRKDSPHSRSGSSVS
SRSYSPERSKSYSFHQSQHRKSVRPGASYKRQNEGNPERDKERPVQSLKTSRDTSPSS
GSAVSSSKVLDKPSRLTEKELAEAASKWAAEKLEKSDESNLPEISEYEAGSTAPLFTD
QPEEPESNTTHGIELFEDSQLTTRSKAIASKTKEIEQVRV"
BASE COUNT 446 a 229 c 273 g 357 t
ORIGIN
1 cggcggcgag cggacggctg catttacggg gtctcccgga gggccagagt cggaaattgt
61 tgaaaacgtt aaatttgatt cctaaaagga ctcaatggct tacagaagag acgaaatgtg
121 gtctgaggga cgatatgaat atgaaagaat tccgagagaa cgagcacctc ctcgaagtca
181 tcccagtgat gaatctggtt atagatggac aagagacgat cattctgcaa gcaggcaacc
241 tgaatacagg gacatgagag atggctttag aagaaaaagt ttctactctt cccattatgc
301 gagagagcgg tctccttata aaagggacaa tacttttttc agagaatcac ctgttggccg
361 aaaggattct ccacacagca gatctggttc cagtgtcagt agcagaagct actctccaga
421 aaggagcaaa tcatactctt tccatcagtc tcaacataga aagtccgtgc gtcctggtgc
481 ctcctacaaa cggcagaatg aaggaaatcc tgaaagagat aaagagaggc ctgtccagtc
541 tttgaaaaca tcaagagata cttcaccctc aagtggttca gcagtttctt catcaaaggt
601 gttagacaaa cccagtaggc taactgaaaa ggaacttgct gaggctgcaa gcaagtgggc
661 tgctgaaaag ctagagaaat cagatgaaag taacttgcct gaaatttctg agtatgaggc
721 gggatccaca gcaccattgt ttactgacca gccagaggaa cctgagtcaa acacaacaca
781 tgggatagaa ttatttgaag atagtcagct aaccactcgc tctaaagcaa tagcatcaaa
841 aaccaaagag attgaacagg tgagagtcta gttgtcttca tgtacataat ttttgtttgt
901 gttgctttgc acatgtaaac atttattgaa taaatatgct tcatttcttt ttccacctgt
961 aactctaaaa ctacaactta aaaaattata aaaattgttt gagttgactt cacagtcagt
1021 ttgatcagta tggtccccca cctggattgt ttatttttaa ataaaaaaca gacttctttt
1081 ttacagaata ttaatattct agttagtatg aagcaattaa aaattattaa agttaatagg
1141 gatgggatgg aagaaatgtt caatgtagca aaatgttagc aaatgttatt tttgaatatt
1201 gggattacag atgtttctta tgttttttca ttatacttta aggtagtttc caaatattaa
1261 aggaaaaata aaggatacta tttaagtcta aaaaaaaaaa aaaaa
//