LOCUS BC039742 1633 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens poly(rC) binding protein 1, mRNA (cDNA clone MGC:47561
IMAGE:6061411), complete cds.
ACCESSION BC039742
VERSION BC039742.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1633)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1633)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14141164.
FEATURES Location/Qualifiers
source 1..1633
/db_xref="H-InvDB:HIT000052249"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47561 IMAGE:6061411"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1633
/gene="PCBP1"
/gene_synonym="hnRNP-E1"
/gene_synonym="hnRNP-X"
/gene_synonym="HNRPE1"
/gene_synonym="HNRPX"
/db_xref="GeneID:5093"
/db_xref="HGNC:HGNC:8647"
/db_xref="MIM:601209"
CDS 153..1223
/gene="PCBP1"
/gene_synonym="hnRNP-E1"
/gene_synonym="hnRNP-X"
/gene_synonym="HNRPE1"
/gene_synonym="HNRPX"
/codon_start=1
/product="poly(rC) binding protein 1"
/protein_id="AAH39742.1"
/db_xref="GeneID:5093"
/db_xref="HGNC:HGNC:8647"
/db_xref="MIM:601209"
/translation="MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESG
ARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRL
VVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVK
QICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPP
LDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA
STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAA
SISLAQYLINARLSSEKGMGCS"
BASE COUNT 430 a 437 c 399 g 367 t
ORIGIN
1 ccacgcgtcc gcgcccgctc ccgctcgctc ccgcggccct cgctcgcctc gcgccggcag
61 ttttgggcct acacctcccc tccccccgcc agccgccaaa gacttgacca cgtaacgagc
121 ccaactcccc cgaacgccgc ccgccgctcg ccatggatgc cggtgtgact gaaagtggac
181 taaatgtgac tctcaccatt cggcttctta tgcacggaaa ggaagtagga agcatcattg
241 ggaagaaagg ggagtcggtt aagaggatcc gcgaggagag tggcgcgcgg atcaacatct
301 cggaggggaa ttgtccggag agaatcatca ctctgaccgg ccccaccaat gccatcttta
361 aggctttcgc tatgatcatc gacaagctgg aggaagatat caacagctcc atgaccaaca
421 gtaccgcggc cagcaggccc ccggtcaccc tgaggctggt ggtgccggcc acccagtgcg
481 gctccctgat tgggaaaggc gggtgtaaga tcaaagagat ccgcgagagt acgggggcgc
541 aggtccaggt ggcgggggat atgctgccca actccaccga gcgggccatc accatcgctg
601 gcgtgccgca gtctgtcacc gagtgtgtca agcagatttg cctggtcatg ctggagacgc
661 tctcccagtc tccgcaaggg agagtcatga ccattccgta ccagcccatg ccggccagct
721 ccccagtcat ctgcgcgggc ggccaagatc ggtgcagcga cgctgcgggc tacccccatg
781 ccacccatga cctggaggga ccacctctag atgcctactc gattcaagga caacacacca
841 tttctccgct cgatctggcc aagctgaacc aggtggcaag acaacagtct cactttgcca
901 tgatgcacgg cgggaccgga ttcgccggaa ttgactccag ctctccagag gtgaaaggct
961 attgggcaag tttggatgca tctactcaaa ccacccatga actcaccatt ccaaataact
1021 taattggctg cataatcggg cgccaaggcg ccaacattaa tgagatccgc cagatgtccg
1081 gggcccagat caaaattgcc aacccagtgg aaggctcctc tggtaggcag gttactatca
1141 ctggctctgc tgccagtatt agtctggccc agtatctaat caatgccagg ctttcctctg
1201 agaagggcat ggggtgcagc tagaacagtg taggttccct caataacccc tttctgctgt
1261 tctcccatga tccaactgtg taatttctgg tcagtgattc caggttttaa ataatttgta
1321 agtgttcagt ttctacacaa ctttatcatc cgctaagaat ttaaaaatca cattctctgt
1381 tcagctgtta atgctgggat ccatatttag ttttataagc ttttccctgt ttttagtttt
1441 gttttgggtt ttttggctca tgaattttat ttctgtttgt cgataagaaa tgtaagagtg
1501 gaatgttaat aaatttcagt ttagttctgt aatgtcaaga atttaagaat taaaaaacgg
1561 attggttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa aaa
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