LOCUS BC039733 1908 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pentraxin-related gene, rapidly induced by IL-1 beta,
mRNA (cDNA clone MGC:47747 IMAGE:5768379), complete cds.
ACCESSION BC039733
VERSION BC039733.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1908)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1908)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: l Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543449.
FEATURES Location/Qualifiers
source 1..1908
/db_xref="H-InvDB:HIT000052243"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47747 IMAGE:5768379"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1908
/gene="PTX3"
/gene_synonym="TSG-14"
/db_xref="GeneID:5806"
/db_xref="HGNC:HGNC:9692"
/db_xref="MIM:602492"
CDS 117..1262
/gene="PTX3"
/gene_synonym="TSG-14"
/codon_start=1
/product="pentraxin-related gene, rapidly induced by IL-1
beta"
/protein_id="AAH39733.1"
/db_xref="GeneID:5806"
/db_xref="HGNC:HGNC:9692"
/db_xref="MIM:602492"
/translation="MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDP
TPCDCGQEHSEWDKLFIMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARP
CAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTR
ADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDV
LNKTILFSYGTKRNPYEIQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNS
EEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLT
GFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS"
BASE COUNT 537 a 390 c 505 g 476 t
ORIGIN
1 catttattaa ggactctctg ctccagcctc tcactctcac tctcctccgc tcaaactcag
61 ctcacttgag agtctcctcc cgccagctgt ggaaagaact ttgcgtctct ccagcaatgc
121 atctccttgc gattctgttt tgtgctctct ggtctgcagt gttggccgag aactcggatg
181 attatgatct catgtatgtg aatttggaca acgaaataga caatggactc catcccactg
241 aggaccccac gccgtgcgac tgcggtcagg agcactcgga atgggacaag ctcttcatca
301 tgctggagaa ctcgcagatg agagagcgca tgctgctgca agccacggac gacgtcctgc
361 ggggcgagct gcagaggctg cgggaggagc tgggccggct cgcggaaagc ctggcgaggc
421 cgtgcgcgcc gggggctccc gcagaggcca ggctgaccag tgctctggac gagctgctgc
481 aggcgacccg cgacgcgggc cgcaggctgg cgcgtatgga gggcgcggag gcgcagcgcc
541 cagaggaggc ggggcgcgcc ctggccgcgg tgctagagga gctgcggcag acgcgagccg
601 acctgcacgc ggtgcagggc tgggctgccc ggagctggct gccggcaggt tgtgaaacag
661 ctattttatt cccaatgcgt tccaagaaga tttttggaag cgtgcatcca gtgagaccaa
721 tgaggcttga gtcttttagt gcctgcattt gggtcaaagc cacagatgta ttaaacaaaa
781 ccatcctgtt ttcctatggc acaaagagga atccatatga aatccagctg tatctcagct
841 accaatccat agtgtttgtg gtgggtggag aggagaacaa actggttgct gaagccatgg
901 tttccctggg aaggtggacc cacctgtgcg gcacctggaa ttcagaggaa gggctcacat
961 ccttgtgggt aaatggtgaa ctggcggcta ccactgttga gatggccaca ggtcacattg
1021 ttcctgaggg aggaatcctg cagattggcc aagaaaagaa tggctgctgt gtgggtggtg
1081 gctttgatga aacattagcc ttctctggga gactcacagg cttcaatatc tgggatagtg
1141 ttcttagcaa tgaagagata agagagaccg gaggagcaga gtcttgtcac atccggggga
1201 atattgttgg gtggggagtc acagagatcc agccacatgg aggagctcag tatgtttcat
1261 aaatgttgtg aaactccact tgaagccaaa gaaagaaact cacacttaaa acacatgcca
1321 gttgggaagg tctgaaaact cagtgcataa taggaacact tgagactaat gaaagagaga
1381 gttgagacca atctttattt gtactggcca aatactgaat aaacagttga aggaaagaca
1441 ttggaaaaag cttttgagga taatgttact agactttatg ccatggtgct ttcagtttaa
1501 tgctgtgtct ctgtcagata aactctcaaa taattaaaaa ggactgtatt gttgaacaga
1561 gggacaattg ttttactttt ctttggttaa ttttgttttg gccagagatg aattttacat
1621 tggaagaata acaaaataag atttgttgtc cattgttcat tgttattggt atgtacctta
1681 ttacaaaaaa aatgatgaaa acatatttat actacaaggt gacttaacaa ctataaatgt
1741 agtttatgtg ttataatcga atgtcacgtt tttgagaaga tagtcatata agttatattg
1801 caaaagggat ttgtattaat ttaagactat ttttgtaaag ctctactgta aataaaatat
1861 tttataaaac taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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