LOCUS BC039733 1908 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens pentraxin-related gene, rapidly induced by IL-1 beta, mRNA (cDNA clone MGC:47747 IMAGE:5768379), complete cds. ACCESSION BC039733 VERSION BC039733.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1908) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1908) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: l Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31543449. FEATURES Location/Qualifiers source 1..1908 /db_xref="H-InvDB:HIT000052243" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:47747 IMAGE:5768379" /tissue_type="Brain, fetal, whole pooled" /clone_lib="NIH_MGC_121" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1908 /gene="PTX3" /gene_synonym="TSG-14" /db_xref="GeneID:5806" /db_xref="HGNC:HGNC:9692" /db_xref="MIM:602492" CDS 117..1262 /gene="PTX3" /gene_synonym="TSG-14" /codon_start=1 /product="pentraxin-related gene, rapidly induced by IL-1 beta" /protein_id="AAH39733.1" /db_xref="GeneID:5806" /db_xref="HGNC:HGNC:9692" /db_xref="MIM:602492" /translation="MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDP TPCDCGQEHSEWDKLFIMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARP CAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTR ADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDV LNKTILFSYGTKRNPYEIQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNS EEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLT GFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS" BASE COUNT 537 a 390 c 505 g 476 t ORIGIN 1 catttattaa ggactctctg ctccagcctc tcactctcac tctcctccgc tcaaactcag 61 ctcacttgag agtctcctcc cgccagctgt ggaaagaact ttgcgtctct ccagcaatgc 121 atctccttgc gattctgttt tgtgctctct ggtctgcagt gttggccgag aactcggatg 181 attatgatct catgtatgtg aatttggaca acgaaataga caatggactc catcccactg 241 aggaccccac gccgtgcgac tgcggtcagg agcactcgga atgggacaag ctcttcatca 301 tgctggagaa ctcgcagatg agagagcgca tgctgctgca agccacggac gacgtcctgc 361 ggggcgagct gcagaggctg cgggaggagc tgggccggct cgcggaaagc ctggcgaggc 421 cgtgcgcgcc gggggctccc gcagaggcca ggctgaccag tgctctggac gagctgctgc 481 aggcgacccg cgacgcgggc cgcaggctgg cgcgtatgga gggcgcggag gcgcagcgcc 541 cagaggaggc ggggcgcgcc ctggccgcgg tgctagagga gctgcggcag acgcgagccg 601 acctgcacgc ggtgcagggc tgggctgccc ggagctggct gccggcaggt tgtgaaacag 661 ctattttatt cccaatgcgt tccaagaaga tttttggaag cgtgcatcca gtgagaccaa 721 tgaggcttga gtcttttagt gcctgcattt gggtcaaagc cacagatgta ttaaacaaaa 781 ccatcctgtt ttcctatggc acaaagagga atccatatga aatccagctg tatctcagct 841 accaatccat agtgtttgtg gtgggtggag aggagaacaa actggttgct gaagccatgg 901 tttccctggg aaggtggacc cacctgtgcg gcacctggaa ttcagaggaa gggctcacat 961 ccttgtgggt aaatggtgaa ctggcggcta ccactgttga gatggccaca ggtcacattg 1021 ttcctgaggg aggaatcctg cagattggcc aagaaaagaa tggctgctgt gtgggtggtg 1081 gctttgatga aacattagcc ttctctggga gactcacagg cttcaatatc tgggatagtg 1141 ttcttagcaa tgaagagata agagagaccg gaggagcaga gtcttgtcac atccggggga 1201 atattgttgg gtggggagtc acagagatcc agccacatgg aggagctcag tatgtttcat 1261 aaatgttgtg aaactccact tgaagccaaa gaaagaaact cacacttaaa acacatgcca 1321 gttgggaagg tctgaaaact cagtgcataa taggaacact tgagactaat gaaagagaga 1381 gttgagacca atctttattt gtactggcca aatactgaat aaacagttga aggaaagaca 1441 ttggaaaaag cttttgagga taatgttact agactttatg ccatggtgct ttcagtttaa 1501 tgctgtgtct ctgtcagata aactctcaaa taattaaaaa ggactgtatt gttgaacaga 1561 gggacaattg ttttactttt ctttggttaa ttttgttttg gccagagatg aattttacat 1621 tggaagaata acaaaataag atttgttgtc cattgttcat tgttattggt atgtacctta 1681 ttacaaaaaa aatgatgaaa acatatttat actacaaggt gacttaacaa ctataaatgt 1741 agtttatgtg ttataatcga atgtcacgtt tttgagaaga tagtcatata agttatattg 1801 caaaagggat ttgtattaat ttaagactat ttttgtaaag ctctactgta aataaaatat 1861 tttataaaac taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa //