LOCUS BC039593 4490 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin specific peptidase 20, mRNA (cDNA clone
MGC:48817 IMAGE:5588842), complete cds.
ACCESSION BC039593
VERSION BC039593.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4490)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4490)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: i Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56713257.
FEATURES Location/Qualifiers
source 1..4490
/db_xref="H-InvDB:HIT000052220"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48817 IMAGE:5588842"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4490
/gene="USP20"
/gene_synonym="KIAA1003"
/gene_synonym="LSFR3A"
/gene_synonym="VDU2"
/db_xref="GeneID:10868"
/db_xref="HGNC:HGNC:12619"
CDS 159..2900
/gene="USP20"
/gene_synonym="KIAA1003"
/gene_synonym="LSFR3A"
/gene_synonym="VDU2"
/codon_start=1
/product="ubiquitin specific peptidase 20"
/protein_id="AAH39593.1"
/db_xref="GeneID:10868"
/db_xref="HGNC:HGNC:12619"
/translation="MGDSRDLCPHLDSIGEVTKEDLLLKSKGTCQSCGVTGPNLWACL
QVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLG
SSSKFSEQDSPPPSHPLKAVPIAVADEGESESEDDDLKPRGLTGMKNLGNSCYMNAAL
QALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLVSEVWHKKRPSYVVPTSLSHGIK
LVNPMFRGYAQQDTQEFLRCLMDQLHEELKEPVVATVALTEARDSDSSDTDEKREGDR
SPSEDEFLSCDSSSDRGEGDGQGRGGGSSQAETELLIPDEAGRAISEKERMKDRKFSW
GQQRTNSEQVDEDADVDTAMAALDQPAEAQPPSPRSSSPCRTPEPDNDAHLRSSSRPC
SPVHHHEGHAKLSSSPPRASPVRMAPSYVLKKAQVLSAGSRRRKEQRYRSVISDIFDG
SILSLVQCLTCDRVSTTVETFQDLSLPIPGKEDLAKLHSAIYQNVPAKPGACGDSYAA
QGWLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKKLR
NGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLAKECTSQIT
TYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYR
KSSEEAMRERQQVVSLAAMREPSLLRFYVSREWLNKFNTFAEPGPITNQTFLCSHGGI
PPHKYHYIDDLVVILPQNVWEHLYNRFGGGPAVNHLYVCSICQVEIEALAKRRRIEID
TFIKLNKAFQAEESPGVIYCISMQWFREWEAFVKGKDNEPPGPIDNSRIAQVKGSGHV
QLKQGADYGQISEETWTYLNSLYGGGPEIAIRQSVAQPLGPENLHGEQKIEAETRAV"
BASE COUNT 948 a 1347 c 1341 g 854 t
ORIGIN
1 caggcggcgg cggcgcagtt gcgagtgcag gctccttgcc agaggcctcc actcactcca
61 gacccctata gcccgtcgct gtcagctgtc aacaaaggat gcgaatgctg gccgcttcct
121 gtgggcttcg tgtcacccag aggtgagccc aggccaggat gggggactcc agggaccttt
181 gccctcacct tgactccata ggagaggtga ccaaagagga cttgctgctc aaatctaagg
241 gaacctgtca gtcgtgtggg gtcaccggac caaacctatg ggcctgtctg caggttgcct
301 gcccctatgt tggctgcgga gaatccttcg ctgaccacag caccattcat gcacaggcaa
361 aaaagcacaa cttgaccgtg aacctgacca cgttccgact gtggtgttac gcctgtgaga
421 aggaggtatt cctggagcag cggctggcag cccctctgct gggctcctct tccaagttct
481 ctgaacagga ctccccgcca ccctcccacc ctctgaaagc tgttcctatt gctgtggctg
541 atgaaggaga gtctgagtca gaggatgatg acctgaaacc tcgaggcctc acgggcatga
601 agaacctcgg gaactcctgc tacatgaacg ccgccctgca ggccctgtcc aattgcccgc
661 cgctgactca gttcttcttg gagtgtggcg gcctggtgcg cacagataag aagccagccc
721 tgtgcaagag ctaccagaag ctggtctctg aggtctggca taagaaacgg ccaagctacg
781 tggtccccac cagtctgtct catgggatca agttggtcaa cccaatgttc cgaggctatg
841 cccagcagga cacccaagag ttccttcgct gcctgatgga ccagctgcac gaggagctca
901 aggagccggt ggtggccacg gtggcgctga cggaggctcg ggactcagat tcgagtgaca
961 cggatgagaa acgggagggt gaccggagcc catcagaaga tgagttcttg tcctgtgact
1021 cgagcagtga ccggggtgag ggtgacgggc aggggcgtgg cgggggcagc tcgcaggccg
1081 agacggagct gctgatccca gatgaggcgg gccgagccat ctctgagaag gagcggatga
1141 aggaccgcaa gttctcctgg ggccagcagc gtacaaactc ggagcaagtg gacgaggacg
1201 ctgatgtgga cactgccatg gctgcccttg accagcccgc ggaggcccag cccccgtcac
1261 cacggtcctc cagcccctgc cggacgccag agccggacaa tgatgctcac ctacgcagct
1321 cctctcgccc ctgcagcccc gtccaccacc acgagggcca tgccaagctg tctagcagcc
1381 cccctcgtgc aagccccgtg aggatggcac cgtcgtacgt gctcaagaaa gcccaggtat
1441 tgagtgctgg cagccggagg cggaaggagc agcgctaccg cagcgtcatc tcagacatct
1501 ttgacggctc cattctcagc ctcgtgcagt gtctcacctg tgaccgggta tccaccacag
1561 tggaaacgtt ccaggactta tcactgccca ttcctggaaa ggaggacctg gccaagctcc
1621 attcagccat ctaccagaat gtgccggcca agccaggcgc ctgtggggac agctatgccg
1681 cccagggctg gctggccttc attgtggagt acatccgacg gtttgtggta tcctgtaccc
1741 ccagctggtt ttgggggcct gtcgtcaccc tggaagactg ccttgctgcc ttctttgccg
1801 ctgatgagtt aaagggtgac aacatgtaca gctgtgagcg gtgtaagaag ctgcggaacg
1861 gagtgaagta ctgcaaagtc ctgcggttgc ccgagatcct gtgcattcac ctaaagcgct
1921 ttcggcacga ggtgatgtac tcattcaaga tcaacagcca cgtctccttc cccctcgagg
1981 ggctcgacct gcgccccttc cttgccaagg agtgcacatc ccagatcacc acctacgacc
2041 tcctctcggt catctgccac cacggcacgg caggcagtgg gcactacatc gcctactgcc
2101 agaacgtgat caatgggcag tggtacgagt ttgatgacca gtacgtcaca gaagtccacg
2161 agacggtggt gcagaacgcc gagggctacg tactcttcta caggaagagc agcgaggagg
2221 ccatgcggga gcgacagcag gtggtgtccc tggccgccat gcgggagccc agcctgctgc
2281 ggttctacgt gtcccgcgag tggctcaaca agttcaacac cttcgcggag ccaggcccca
2341 tcaccaacca gaccttcctc tgctcccacg gaggcatccc gccccacaaa taccactaca
2401 tcgacgacct ggtggtcatc ctgccccaga acgtctggga gcacctgtac aacagattcg
2461 ggggtggccc cgccgtgaac cacctgtacg tgtgctccat ctgccaggtg gagatcgagg
2521 cactggccaa gcgcaggagg atcgagatcg acaccttcat caagttgaac aaggccttcc
2581 aggccgagga gtcgccgggc gtcatctact gcatcagcat gcagtggttc cgggagtggg
2641 aggcgttcgt caaggggaag gacaacgagc cccccgggcc cattgacaac agcaggattg
2701 cacaggtcaa aggaagcggc catgtccagc tgaagcaggg agctgactac gggcagattt
2761 cggaggagac ctggacctac ctgaacagcc tgtatggagg tggccccgag attgccatcc
2821 gccagagtgt ggcgcagccg ctgggcccag agaacctgca cggggagcag aagatcgaag
2881 ccgagacgcg ggccgtgtga tctgctgggc tagtctgtaa gtcgccccgg ctggtccctc
2941 catggcactc tgggtcctct cctcactctc cagagaccct cacatgtcct tttgaacatc
3001 caaagagcag gtccctgaaa gcaccttcct ggaggatgtg ggagggccct ggacatggcc
3061 cggccccact gctgagtgcc cgtgtcccca cagccccatg tgccccaccc cgcggaaggc
3121 gtgtttgtgc ccagaagaga ggccgggctg ctgcagaacc ccgccgtgta aagaggcaga
3181 aaagttggtt tggtttgcag taacgctgca actagaaaat atatgcactt caggcttgtt
3241 gaaacgacca agactctgtg acgttaattt gggtctttgt cctggcagtg cctctgccag
3301 tcactgtcat cgttgtgtcc cccacaactg tcctcttgct agctcggccc agctttgtcc
3361 ctggagcccg atgctacccc tgtcagacag aggctgcggc ctgggccaga gtcagggagt
3421 agctgctgct tcacggcgtc tccactgtgc gattggcccg gagccccgaa gactcggagg
3481 gagctgctca gggccggtga gcgcagccag aagccctggc cagtgaggag ctcacaggtc
3541 ctccctggtg gtcccgccgc acctctgcat ctcctgggcg tcaccaggaa ggctctgaag
3601 tcccgggctg ctctcagcac ttctcctgca gactgaagac tctggactca ttgctgattg
3661 gaacaccagg aggaggttgg atttctgcca gtgggggatg tttctggagg cagctggtcc
3721 cccacaccgc gtcctgctga gcctgccccc tggattggct gtaatttgcc tcgaagttca
3781 gcagttcatc ttcatgggaa atttgctgag cccccaccag ggaaccggat gatgaaacag
3841 ggatacctca cagcttggcc atttgaggca aaggcagctt cccgagctga tgctaaagaa
3901 gacagacttt cccttcctcc cagcagcagc agtgcagagc ccgcctggag ggatgtgggg
3961 gctgtgcagg gtgcagcgct caggtggatc ctgggaagca gcctctggat gctgagtgga
4021 gggagccact gagcacagca aggcaccaaa gcccctggag aaaccgccag ggcgaggtgc
4081 gaccatcatc aggatcaaag cagacggggc gtgggtgggg aaggggctct gggaccagac
4141 cccccacact actgcgtctt tgtttctatc agtctttgta gaagcaggtg gtggtggaaa
4201 ttccagcagg tgggtcccgc agaggccctg aggcctcact tttcggatct tctgtcccag
4261 atcctgctcc ctccctgctg agcctggggt tcccctggca ttggccccag ccttctgaaa
4321 gccggcgctg cagccagagg ccgcacgctg cactgtcgcg acgcagagag gcttctgtgc
4381 aggctgggat cgggccccat gtctgtgctg tctagtttgt gttcaaaatg tcagaataaa
4441 cacagaataa atgttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//