LOCUS BC039588 1225 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 9 open reading frame 40, mRNA (cDNA clone
MGC:48777 IMAGE:5740394), complete cds.
ACCESSION BC039588
VERSION BC039588.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1225)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1225)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: j Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922232.
FEATURES Location/Qualifiers
source 1..1225
/db_xref="H-InvDB:HIT000052218"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48777 IMAGE:5740394"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1225
/gene="C9orf40"
/gene_synonym="FLJ10110"
/db_xref="GeneID:55071"
/db_xref="HGNC:HGNC:23433"
CDS 210..794
/gene="C9orf40"
/gene_synonym="FLJ10110"
/codon_start=1
/product="chromosome 9 open reading frame 40"
/protein_id="AAH39588.1"
/db_xref="GeneID:55071"
/db_xref="HGNC:HGNC:23433"
/translation="MAKRRAAEPVTFHVPWKRLLLCDFAEQPPPPPLWIRPPGVAHAG
QLLGVPEQHRKRKIDAGTMAEPSASPSKRRDSGDNSAPSGQEREDHGLETGDPPLPPP
PVLPGPGEELPGARLPGGGGDDGAGRAGPPRGDWGVASRQHNEEFWQYNTFQYWRNPL
PPIDLADIEDLSEDTLTEATLQGRNEGAEVDMES"
BASE COUNT 287 a 334 c 343 g 261 t
ORIGIN
1 ggctgagcgc gggagctgcc tccgagccgg agccccagcc ctaggccctg cgcgagctgc
61 cccgccctac cccctccagc gtcctgtcgc ctcctcgccc gacttcggcc tgtccctctc
121 tcacgcgctc agtcctcgct cttcgccccc cgcagctatc ggcactcggt ctcccgcgcc
181 tggcgggctc cgcccgagcc tctgggccca tggccaagcg gcgtgcggcc gagccggtga
241 cgttccacgt gccttggaag cggctcctgc tttgcgactt cgctgagcag ccgccgccac
301 cgcctctctg gatccggccg cccggggtcg cgcatgctgg gcagctcctc ggcgtcccag
361 agcagcaccg aaagcgcaaa atcgacgcag ggaccatggc agagccctcg gcttcgccca
421 gcaagcgccg tgacagcggg gacaacagcg ccccgagcgg ccaggagcgt gaggaccacg
481 gtctggagac aggcgatccg ccgctgccgc cgccgcccgt actgccgggg ccgggggagg
541 agctcccggg cgcccggctc ccggggggcg gtggcgacga cggggcgggg cgcgcaggac
601 ccccgcgggg agactggggg gtcgcatcgc gccagcacaa tgaagaattt tggcagtata
661 ataccttcca gtactggagg aatcctttgc ctcctattga tctggcagac attgaagatt
721 taagtgaaga caccctgaca gaagcaacac ttcagggcag gaatgaaggg gctgaggttg
781 acatggagtc ctgatgtaag gagccgaagc agtgggattg gctgatttga ggagatgtct
841 ctaagtgaat tctcgtattc ttaagggaaa agttattttc catacttgaa gttatatttc
901 caaacctgag aaatgaagaa agattgttct gacattaaat acctacagtt actactgaac
961 ctcttaataa ggatttgtca aggatagagt acagttgtag gggaagtatt ttatgtatgc
1021 attcttagag caaaaagttt tgtttaaatt ctagaattga aggtactgat cttataaaaa
1081 gaaattctag cagttttaga aataggtggg aaaaactcaa atattcctcc tatctgcacc
1141 aaaaagttta tttgtggtat ataaaatgaa tattgtttta taataacttg ttaataaagt
1201 actttctaat aaaaaaaaaa aaaaa
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