LOCUS BC039498 1672 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 6, mRNA (cDNA clone MGC:50406 IMAGE:5552785), complete cds. ACCESSION BC039498 VERSION BC039498.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1672) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1672) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 88 Row: f Column: 8. FEATURES Location/Qualifiers source 1..1672 /db_xref="H-InvDB:HIT000052203" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:50406 IMAGE:5552785" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1672 /gene="SLC39A6" /gene_synonym="LIV-1" /db_xref="GeneID:25800" CDS 309..1610 /gene="SLC39A6" /gene_synonym="LIV-1" /codon_start=1 /product="SLC39A6 protein" /protein_id="AAH39498.1" /db_xref="GeneID:25800" /translation="MGIQVPLNATEFNYLCPAIINQIDARSCLIHTSEKKAEIPPKTY SLQIAWVGGFIAISIISFLSLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDAFLHL LPHSHASHHHSHSHEEPAMEMKRGPLFSHLSSQNIEESAYFDSTWKGLTALGGLYFMF LVEHVLTLIKQFKDKKKKNQKKPENDDDVEIKKQLSKYESQLSTNEEKVDTDDRTEGY LRADSQEPSHFDSQQPAVLEEEEVMIAHAHPQEVYNEYVPRGCKNKCHSHFHDTLGQS DDLIHHHHDYHHILHHHHHQNHHPHSHSQRYSREELKDAGVATLAWMVIMGDGLHNFS DGLAIGAAFTEGLSSGLSTSVAVFCHELPHELGDFAVLLKAGMTVKQAVLYNALSAML AYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMVSF" misc_feature 543..995 /gene="SLC39A6" /gene_synonym="LIV-1" /note="Zip; Region: ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family" /db_xref="CDD:pfam02535" misc_feature 1218..1604 /gene="SLC39A6" /gene_synonym="LIV-1" /note="Zip; Region: ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family" /db_xref="CDD:pfam02535" BASE COUNT 449 a 387 c 391 g 445 t ORIGIN 1 cgaagggggc ggtggttccc cgcggcgctg cgcgcggcgg taattagtga ttgtcttcca 61 gcttcgcgaa ggctaggggc gcggctgccg ggtggctgcg cggcgctgcc cccggaccga 121 ggggcagcca atccaatgaa accaccgcgt gttcgcgcct ggtagagatt tctcgaagac 181 accagtgggc ccgttccgag ccctctggac cgcccgtgtg gaaccaaacc tgcgcgcgtg 241 gccgggccgt gggacaacga ggccgcggag actgtttcaa tgcatcaaag ctactgacat 301 ctcatggcat gggcatccag gttccgctga atgcaacaga gttcaactat ctctgtccag 361 ccatcatcaa ccaaattgat gctagatctt gtctgattca tacaagtgaa aagaaggctg 421 aaatccctcc aaagacctat tcattacaaa tagcctgggt tggtggtttt atagccattt 481 ccatcatcag tttcctgtct ctgctggggg ttatcttagt gcctctcatg aatcgggtgt 541 ttttcaaatt tctcctgagt ttccttgtgg cactggccgt tgggactttg agtggtgatg 601 cttttttaca ccttcttcca cattctcatg caagtcacca ccatagtcat agccatgaag 661 aaccagcaat ggaaatgaaa agaggaccac ttttcagtca tctgtcttct caaaacatag 721 aagaaagtgc ctattttgat tccacgtgga agggtctaac agctctagga ggcctgtatt 781 tcatgtttct tgttgaacat gtcctcacat tgatcaaaca atttaaagat aagaagaaaa 841 agaatcagaa gaaacctgaa aatgatgatg atgtggagat taagaagcag ttgtccaagt 901 atgaatctca actttcaaca aatgaggaga aagtagatac agatgatcga actgaaggct 961 atttacgagc agactcacaa gagccctccc actttgattc tcagcagcct gcagtcttgg 1021 aagaagaaga ggtcatgata gctcatgctc atccacagga agtctacaat gaatatgtac 1081 ccagagggtg caagaataaa tgccattcac atttccacga tacactcggc cagtcagacg 1141 atctcattca ccaccatcat gactaccatc atattctcca tcatcaccac caccaaaacc 1201 accatcctca cagtcacagc cagcgctact ctcgggagga gctgaaagat gccggcgtcg 1261 ccactctggc ctggatggtg ataatgggtg atggcctgca caatttcagc gatggcctag 1321 caattggtgc tgcttttact gaaggcttat caagtggttt aagtacttct gttgctgtgt 1381 tctgtcatga gttgcctcat gaattaggtg actttgctgt tctactaaag gctggcatga 1441 ccgttaagca ggctgtcctt tataatgcat tgtcagccat gctggcgtat cttggaatgg 1501 caacaggaat tttcattggt cattatgctg aaaatgtttc tatgtggata tttgcactta 1561 ctgctggctt attcatgtat gttgctctgg ttgatatggt aagtttttaa gaagtcttat 1621 tacattattg accaacaata aaatagagaa aatattcaaa aaaaaaaaaa aa //