LOCUS BC039498 1672 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 6,
mRNA (cDNA clone MGC:50406 IMAGE:5552785), complete cds.
ACCESSION BC039498
VERSION BC039498.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1672)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1672)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: f Column: 8.
FEATURES Location/Qualifiers
source 1..1672
/db_xref="H-InvDB:HIT000052203"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50406 IMAGE:5552785"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1672
/gene="SLC39A6"
/gene_synonym="LIV-1"
/db_xref="GeneID:25800"
CDS 309..1610
/gene="SLC39A6"
/gene_synonym="LIV-1"
/codon_start=1
/product="SLC39A6 protein"
/protein_id="AAH39498.1"
/db_xref="GeneID:25800"
/translation="MGIQVPLNATEFNYLCPAIINQIDARSCLIHTSEKKAEIPPKTY
SLQIAWVGGFIAISIISFLSLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDAFLHL
LPHSHASHHHSHSHEEPAMEMKRGPLFSHLSSQNIEESAYFDSTWKGLTALGGLYFMF
LVEHVLTLIKQFKDKKKKNQKKPENDDDVEIKKQLSKYESQLSTNEEKVDTDDRTEGY
LRADSQEPSHFDSQQPAVLEEEEVMIAHAHPQEVYNEYVPRGCKNKCHSHFHDTLGQS
DDLIHHHHDYHHILHHHHHQNHHPHSHSQRYSREELKDAGVATLAWMVIMGDGLHNFS
DGLAIGAAFTEGLSSGLSTSVAVFCHELPHELGDFAVLLKAGMTVKQAVLYNALSAML
AYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMVSF"
misc_feature 543..995
/gene="SLC39A6"
/gene_synonym="LIV-1"
/note="Zip; Region: ZIP Zinc transporter. The ZIP family
consists of zinc transport proteins and many putative
metal transporters. The main contribution to this family
is from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although this
protein in not found within this family"
/db_xref="CDD:pfam02535"
misc_feature 1218..1604
/gene="SLC39A6"
/gene_synonym="LIV-1"
/note="Zip; Region: ZIP Zinc transporter. The ZIP family
consists of zinc transport proteins and many putative
metal transporters. The main contribution to this family
is from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although this
protein in not found within this family"
/db_xref="CDD:pfam02535"
BASE COUNT 449 a 387 c 391 g 445 t
ORIGIN
1 cgaagggggc ggtggttccc cgcggcgctg cgcgcggcgg taattagtga ttgtcttcca
61 gcttcgcgaa ggctaggggc gcggctgccg ggtggctgcg cggcgctgcc cccggaccga
121 ggggcagcca atccaatgaa accaccgcgt gttcgcgcct ggtagagatt tctcgaagac
181 accagtgggc ccgttccgag ccctctggac cgcccgtgtg gaaccaaacc tgcgcgcgtg
241 gccgggccgt gggacaacga ggccgcggag actgtttcaa tgcatcaaag ctactgacat
301 ctcatggcat gggcatccag gttccgctga atgcaacaga gttcaactat ctctgtccag
361 ccatcatcaa ccaaattgat gctagatctt gtctgattca tacaagtgaa aagaaggctg
421 aaatccctcc aaagacctat tcattacaaa tagcctgggt tggtggtttt atagccattt
481 ccatcatcag tttcctgtct ctgctggggg ttatcttagt gcctctcatg aatcgggtgt
541 ttttcaaatt tctcctgagt ttccttgtgg cactggccgt tgggactttg agtggtgatg
601 cttttttaca ccttcttcca cattctcatg caagtcacca ccatagtcat agccatgaag
661 aaccagcaat ggaaatgaaa agaggaccac ttttcagtca tctgtcttct caaaacatag
721 aagaaagtgc ctattttgat tccacgtgga agggtctaac agctctagga ggcctgtatt
781 tcatgtttct tgttgaacat gtcctcacat tgatcaaaca atttaaagat aagaagaaaa
841 agaatcagaa gaaacctgaa aatgatgatg atgtggagat taagaagcag ttgtccaagt
901 atgaatctca actttcaaca aatgaggaga aagtagatac agatgatcga actgaaggct
961 atttacgagc agactcacaa gagccctccc actttgattc tcagcagcct gcagtcttgg
1021 aagaagaaga ggtcatgata gctcatgctc atccacagga agtctacaat gaatatgtac
1081 ccagagggtg caagaataaa tgccattcac atttccacga tacactcggc cagtcagacg
1141 atctcattca ccaccatcat gactaccatc atattctcca tcatcaccac caccaaaacc
1201 accatcctca cagtcacagc cagcgctact ctcgggagga gctgaaagat gccggcgtcg
1261 ccactctggc ctggatggtg ataatgggtg atggcctgca caatttcagc gatggcctag
1321 caattggtgc tgcttttact gaaggcttat caagtggttt aagtacttct gttgctgtgt
1381 tctgtcatga gttgcctcat gaattaggtg actttgctgt tctactaaag gctggcatga
1441 ccgttaagca ggctgtcctt tataatgcat tgtcagccat gctggcgtat cttggaatgg
1501 caacaggaat tttcattggt cattatgctg aaaatgtttc tatgtggata tttgcactta
1561 ctgctggctt attcatgtat gttgctctgg ttgatatggt aagtttttaa gaagtcttat
1621 tacattattg accaacaata aaatagagaa aatattcaaa aaaaaaaaaa aa
//