LOCUS BC039297 3698 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens fibronectin type III domain containing 3B, mRNA (cDNA
clone MGC:39554 IMAGE:5297602), complete cds.
ACCESSION BC039297
VERSION BC039297.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3698)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3698)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: n Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..3698
/db_xref="H-InvDB:HIT000095576"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39554 IMAGE:5297602"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3698
/gene="FNDC3B"
/gene_synonym="DKFZp762K137"
/gene_synonym="FAD104"
/gene_synonym="FLJ23399"
/gene_synonym="PRO4979"
/gene_synonym="YVTM2421"
/db_xref="GeneID:64778"
/db_xref="HGNC:HGNC:24670"
CDS 64..3678
/gene="FNDC3B"
/gene_synonym="DKFZp762K137"
/gene_synonym="FAD104"
/gene_synonym="FLJ23399"
/gene_synonym="PRO4979"
/gene_synonym="YVTM2421"
/codon_start=1
/product="fibronectin type III domain containing 3B"
/protein_id="AAH39297.1"
/db_xref="GeneID:64778"
/db_xref="HGNC:HGNC:24670"
/translation="MYVTMMMTDQIPLELPPLLNGEVAMMPHLVNGDAAQQVILVQVN
PGETFTIRAEDGTLQCIQGPAEVPMMSPNGSIPPIHVPPGYISQVIEDSTGVRRVVVT
PQSPECYPPSYPSAMSPTHHLPPYLTHHPHFIHNSHTAYYPPVTGPGDMPPQFFPQHH
LPHTIYGEQEIIPFYGMSSYITREDQYSKPPHKKLKDRQIDRQNRLNSPPSSIYKSSC
TTVYNGYGKGHSGGSGGGGSGSGPGIKKTERRARSSPKSNDSDLQEYELEVKRVQDIL
SGIEKPQVSNIQARAVVLSWAPPVGLSCGPHSGLSFPYSYEVALSDKGRDGKYKIIYS
GEELECNLKDLRPATDYHVRVYAMYNSVKGSCSEPVSFTTHSCAPECPFPPKLAHRSK
SSLTLQWKAPIDNGSKITNYLLEWDEGKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFR
LAARNDIGTSGYSQEVVCYTLGNIPQMPSAPRLVRAGITWVTLQWSKPEGCSPEEVIT
YTLEIQEDENDNLFHPKYTGEDLTCTVKNLKRSTQYKFRLTASNTEGKSCPSEVLVCT
TSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVA
YSGSATEYTFTHLKPGTLYKLRACCISTGGHSQCSESLPVRTLSIAPGQCRPPRVLGR
PKHKEVHLEWDVPASESGCEVSEYSVEMTEPEDVASEVYHGPELECTVGNLLPGTVYR
FRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSGADIS
EYRLEWGEDEESLELIYHGTDTRFEIRDLLPAAQYCCRLQAFNQAGAGPYSELVLWQT
PASAPDPVSTLCVLEEEPLDAYPDSPSACLVLNWEEPCNNGSEILAYTIDLGDTSITV
GNTTMHVMKDLLPETTYRIRIQAINEIGAGPFSQFIKAKTRPLPPLPPRLECAAAGPQ
SLKLKWGDSNSKTHAAEDIVYTLQLEDRNKRFISIYRGPSHTYKVQRLTEFTCYSFRI
QAASEAGEGPFSETYTFSTTKSVPPTIKAPRVTQLEGNSCEILWETVPSMKGDPVNYI
LQVLVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCACRRCLDTSQELSGAFSPSA
AFVLQRSEVMLTGDMGSLDDPKMKSMMPTDEQFAAIIVLGFATLSILFAFILQYFLMK
"
BASE COUNT 1041 a 917 c 886 g 854 t
ORIGIN
1 agtgtctacc accaaactcc taaggctgga tggtggaagc cagttgaggg aagttctcca
61 tgaatgtacg tcacaatgat gatgaccgac caaatccctc tggaactgcc accattgctg
121 aacggagagg tagccatgat gccccacttg gtgaatggag atgcagctca gcaggttatt
181 ctcgttcaag ttaatccagg tgagactttc acaataagag cagaggatgg aacacttcag
241 tgcattcaag gacctgctga agttcccatg atgtcaccca atggatccat tcctcccatt
301 catgtgcctc caggttatat ctcacaggtg attgaagata gtactggagt ccgccgggtg
361 gtggtcacac cccagtctcc tgagtgttat cccccaagct acccctcagc catgtctcca
421 acccatcatc tccctcccta tctgactcac catccacatt ttattcataa ctcacacacg
481 gcttactacc cacctgttac cggacctgga gatatgccgc ctcagttttt tccccagcat
541 catcttcccc acacaatata tggtgagcaa gaaattatac cattttatgg aatgtcaagc
601 tacatcaccc gagaagacca gtacagcaag cctccgcaca aaaaactgaa agaccgccag
661 atcgatcgcc agaaccgcct caacagccct ccttcttcta tctacaaaag cagctgcaca
721 acagtataca atggctatgg gaagggccat agtggtggaa gtggcggagg cggcagcggt
781 agtggtcccg gaattaagaa aacagagcga cgagcaagaa gcagcccaaa gtcgaatgat
841 tcagacttgc aagaatatga gttggaagta aagagggtgc aagacattct ttcgggaata
901 gagaaaccac aggtttctaa tattcaggca agagcagttg tgttgtcctg ggctccccct
961 gttggacttt cctgtggacc ccacagtggt ctttccttcc cctacagtta cgaggtggcc
1021 ttatcagaca aaggacgaga tggaaaatac aagataattt acagtggaga agaattagaa
1081 tgtaacctga aagatcttag accagcaaca gattatcatg tgagggtgta tgccatgtac
1141 aattccgtaa agggatcctg ctccgagcct gttagcttca ccacccacag ctgtgcaccc
1201 gagtgtcctt tcccccctaa gctggcacat aggagcaaaa gttcactaac cctgcagtgg
1261 aaggcaccaa ttgacaacgg ttcaaaaatc accaactacc ttttagagtg ggatgaggga
1321 aaaagaaata gtggtttcag acagtgcttc ttcgggagcc agaagcactg caagttgaca
1381 aagctttgtc cggcaatggg gtacacattc aggctggccg ctcgaaacga cattggcacc
1441 agtggttata gccaagaggt ggtgtgctac acattaggaa atatccctca gatgccttct
1501 gcaccaaggc tggttcgagc tggcatcaca tgggtcacgt tgcagtggag taagccagaa
1561 ggctgttcac ccgaggaagt gatcacctac accttggaaa ttcaggagga tgaaaatgat
1621 aaccttttcc acccaaaata cactggagag gatttaacct gtactgtgaa aaatctcaaa
1681 agaagcacac agtataaatt caggctgact gcttctaata cggaaggaaa aagctgtcca
1741 agcgaagttc ttgtttgtac gacgagtcct gacaggcctg gacctcctac cagaccgctt
1801 gtcaaaggcc cagttacatc tcatggcttt agtgtcaaat gggatccccc taaggacaat
1861 ggtggttcag aaatcctcaa gtacttgcta gagattactg atggaaattc tgaagcgaat
1921 cagtgggaag tggcctacag tgggtcggct accgaataca ccttcaccca cttgaaacca
1981 ggcactttgt acaaactccg agcatgctgc atcagtaccg gcggacacag ccagtgttct
2041 gaaagtctcc ctgttcgcac actaagcatt gcaccaggtc aatgtcgacc accgagggtt
2101 ttgggtagac caaagcacaa agaagtccac ttagagtggg atgttcctgc atcggaaagt
2161 ggctgtgagg tctcagagta cagcgtggag atgacggagc ccgaagacgt agcctcggaa
2221 gtgtaccatg gcccagagct ggagtgcacc gtcggcaacc tgcttcctgg aaccgtgtat
2281 cgcttccggg tgagggctct gaatgatgga gggtatggtc cctattctga tgtctcagaa
2341 attaccactg ctgcagggcc tcctggacaa tgcaaagcac cttgtatttc ttgtacacct
2401 gatggatgtg tcttagtggg ttgggagagt cctgatagtt ctggtgctga catctcagag
2461 tacaggttgg aatggggaga agatgaagaa tccttagaac tcatttatca tgggacagac
2521 acccgttttg aaataagaga cctgttgcct gctgcacagt attgctgtag actacaggcc
2581 ttcaatcaag caggggcagg gccgtacagt gaacttgtcc tttggcagac gccagcgtct
2641 gcccctgacc ccgtctccac tctctgtgtc ctggaggagg agccccttga tgcctaccct
2701 gattcacctt ctgcgtgcct tgtactgaac tgggaagagc cgtgcaataa cggatctgaa
2761 atccttgctt acaccattga tctaggagac actagcatta ccgtgggcaa caccaccatg
2821 catgttatga aagatctcct tccagaaacc acctaccgga tcagaattca ggctataaat
2881 gaaattggag ctggaccatt tagtcagttc attaaagcaa aaactcggcc attaccaccc
2941 ttgcctccta ggctagaatg tgctgctgct ggtcctcaga gcctgaagct aaaatgggga
3001 gacagtaact ccaagacaca tgcggctgag gacattgtgt acacactaca gctggaggac
3061 agaaacaaga ggtttatttc aatctacaga ggacccagcc acacctacaa ggtccagaga
3121 ctgacggaat tcacatgcta ctccttcagg atccaggcag caagcgaggc tggagaaggg
3181 cccttctcag aaacctatac cttcagcaca accaaaagtg tcccccccac catcaaagca
3241 cctcgagtaa cacagttaga aggaaattca tgtgaaattt tatgggagac ggtaccatca
3301 atgaaaggtg accctgttaa ctacattctg caggtattgg ttggaagaga atctgagtac
3361 aaacaggtgt acaagggaga agaagccaca ttccaaatct caggcctcca gaccaacaca
3421 gactacaggt tccgcgtatg tgcgtgtcgt cgctgtttag acacctctca ggagctaagc
3481 ggagccttca gcccctctgc ggcttttgta ttacaacgaa gtgaggtcat gcttacaggg
3541 gacatgggga gcttagatga tcccaaaatg aagagcatga tgcctactga tgaacagttt
3601 gcagccatca ttgtgcttgg ctttgcaact ttgtccattt tatttgcctt tatattacag
3661 tacttcttaa tgaagtaaac ccaaaaaaaa aaaaaaaa
//