LOCUS BC039258 4375 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens thyrotrophic embryonic factor, mRNA (cDNA clone
MGC:33801 IMAGE:5286096), complete cds.
ACCESSION BC039258
VERSION BC039258.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4375)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4375)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: i Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34486096.
FEATURES Location/Qualifiers
source 1..4375
/db_xref="H-InvDB:HIT000052177"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33801 IMAGE:5286096"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4375
/gene="TEF"
/db_xref="GeneID:7008"
/db_xref="HGNC:HGNC:11722"
/db_xref="MIM:188595"
CDS 86..997
/gene="TEF"
/codon_start=1
/product="thyrotrophic embryonic factor"
/protein_id="AAH39258.1"
/db_xref="GeneID:7008"
/db_xref="HGNC:HGNC:11722"
/db_xref="MIM:188595"
/translation="MSDAGGGKKPPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLME
NPPREARLDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLD
EFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTES
SLEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPM
IKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALR
TEVAELRKEVGKCKTIVSKYETKYGPL"
BASE COUNT 881 a 1197 c 1270 g 1027 t
ORIGIN
1 agcagctgca gcgggtcgca cggctccggc ccatctcggg gggcgggcgg gggaggcgag
61 gtgcgcgagc cgagtccggg gcacgatgtc cgacgcgggc ggcggaaaga agccgcctgt
121 ggacccgcag gcaggacccg gtccggggcc ggggcgcgca gctggggaaa ggggcctgtc
181 ggggtccttc cccctggtcc tgaagaagct gatggagaac cccccgcgcg aggcgcgcct
241 cgataaggaa aaggggaagg aaaagctgga ggaggacgag gccgcagccg ccagcaccat
301 ggctgtctca gcctccctca tgccacccat ctgggacaag accatcccat atgatggcga
361 atctttccac ctggagtaca tggacctgga tgagttcctg ctggagaatg gcatccccgc
421 cagccccacc cacctggccc acaacctgct gctgcctgta gcagagctag aagggaagga
481 gtctgccagc tcttccacag catccccacc atcctcctcc actgccatct ttcagccctc
541 tgaaactgtg tccagcacag aatcttccct ggagaaggag agggagactc ccagtcccat
601 cgaccccaat tgtgtggaag tggatgtgaa cttcaatccg gaccccgccg acctggtgct
661 ctccagtgtg ccaggcgggg agctcttcaa ccctcggaag cacaagtttg ctgaggagga
721 cctgaagccc cagcctatga tcaaaaaggc caagaaggtc tttgtccccg acgagcagaa
781 ggatgaaaag tactggacaa gacgcaagaa gaacaacgtg gcagctaaac ggtcacggga
841 tgcccggcgc ctgaaagaga atcagatcac catccgggca gccttcctgg agaaggagaa
901 cacagccctg cggacggagg tggccgagct acgcaaggag gtgggcaagt gcaagaccat
961 cgtgtccaag tatgagacca aatacgggcc cttgtaaccc gtgccccccg cccgggcggg
1021 gtactgcctg cacctcagac ctctgcctgg gggctccctg taacccctca cacgcgtgga
1081 gacttatgac tcgtcgtggg cgcatggcgg cgcacctgct gcaggagcgg ccacgtctca
1141 gcttcattat accatggcct gcgcacgtgg cgacgtccct gaggggccag tctcctcact
1201 ggtggggaac gcaagagaat ctgcgtagat gggtgactca gccttagttt ctattcttgg
1261 atgtcccagt tgaatcagaa ggggacctct ggagtacaca cctctctcct gggcgctcag
1321 ggtccctgga ctctccctca gtctccagcc tgggctgccg agggctatct ctgcagaatg
1381 agttgtgatc attgtcaccc tatgtcttct caggtagcag ggcgcgtttc cacttaaggt
1441 gtgtctgtca cgcacctcat tctccccaga cagtctttga gtaacatctg ttcccatctt
1501 ccttggaagc aggacacacc agctcctccg tcagtgtctg catgggtagc aggctgcagg
1561 agtggggtct ctgcacagcc tgggatgggg cttggggctg gggcctgcag cagaagtgtg
1621 cccagcgttt ctcagctccc gcaccccttt tcccttatgg ctctgaggcc atcggctgtc
1681 tctgcatttc attggctgtg gaggagagac tcctaggatg gctgctgtct gagccatgag
1741 tgccagggct gagagaggcc tcttcatttc ctctccaggc tactcagagg ccatgtgaag
1801 ctcgtttgtc ccactagacc aggcctctgg gcctgctctt tctttccacc caatgtccag
1861 tcttggatca tagatttaaa aggaaaaccc ctcttatcta ggaggcttta acttcctgga
1921 ccccaggatt caccttccta gtggtgttta gaaaatgcct ccacagcccc cttccaccat
1981 gggcatgaga gctggggtgt gtttcttgag aagctccctt ttttcttgct ctgctcaccg
2041 gtgtggcctg ggctggagtg cactatccct gggggcagct ggggcctcgc aattcttgct
2101 tcaggatctc tcccatgcga gcggcccgga gggtgtcagc agggcaagac acctagtcta
2161 gagtcaccaa ggtcacagtg ccactttcac gggatagcag gctcttggga cttttacaca
2221 ggcctagggt cccctcagtc ttggtcccag gagatggggg ccactcgtga ggctggccat
2281 gctgtggctt ctcacagctg tggctcccct gcctcacaac gactcctttc tcttgtgtgg
2341 cgggactcgc ccttttgctg tgctcagaag attcactgag gaaactcatg gaagcctctg
2401 ctcatttggg tcactgggac acccctgaga tgggtgtgtt tatttgctca gggcgggcag
2461 cctatggtga agaggagaca gaggcgatgg gcgtgcttcg tcctccgtaa cactggcttt
2521 atttaccgtg gtggttcaga gtcccaggcc ctgacctcta aagacttttc ataacagacg
2581 ttaagaccaa gccgtggacc tcaccccagg ggaatgccac ggccctttgg ggacctgcac
2641 acccacctct ccgggggact tgacaagggg ccctgaggcc aagggaggtc actcctccct
2701 ccaggcccct gacttttact ttgtggttct ctaaaaacca tgtacacact ttcactctat
2761 tgtaaccaca cagggcaggc gcatccagca tgtcagtgtc ctgccccggg cagctctccc
2821 tcccgggcac gctccctctg gcctggtgga tcaccaagag ggcggttctc attttgttat
2881 tagtggaaga gccttgagct taaaagctct tcattttctt tgccggaaag tatatggttt
2941 gtgtttttgc agttttattt ttttaaggat ggacactaaa tctctggtgt ccatgttccg
3001 agcccggtgg ctgggatggt ggctcgatgt gtctcctctt tatcccgccc tctgcctgtt
3061 tggtgccctc ccttctttcc cccaggcagt gggtatcggg ttctttccca aagtgcttac
3121 ttggaaagag tgtggctgct ggactctttt cgaaatgccc ctctgagtca ggagcctggt
3181 ggggacaaga tggaggatgt ccacagaggc tgacctgtgg gggaaaagaa gtgctcaggt
3241 aaggttgtct cctctcctgt cctaaaaaat ccatgcttgc aggagagggt tggtgcctgc
3301 tcagtttctg tcgagggaat gggagtctcc tcggctccct cctgggccct ctgcttcttg
3361 gaggccgacc gctggagact gcggctcctg tgcttggatc tttgacatct gtcagtcact
3421 ggaggctaga gaagttgact ttaccttggc tttctgtggg ttcccgatgg gcttggaagt
3481 gccgtctact tcctaagcat cctgtctaaa gctttgtggc accctcagtg caacctcaga
3541 acagacaaat catgaatgag ctggaacttt gcaagaatat tcatattata aatgtctcat
3601 ctgatggagg aacgtgtgca tttagagaga gggagagttt tcaaggttta tggcaacttt
3661 gtggaggacc tgggtaactc ttacccttgg ccaaaggaag aggttttcct gtctggcttc
3721 tgaggttgga gggggcactt agcagtgaac cttaagtctg ggtacatgta accctgctga
3781 ggggctgtgc aggccgctcc tacggtcctt tggcctgagg cagggcggga ggcatgcaag
3841 ccagtggggg aaaacccctc tgaagctggg cagccctcta cctgggcccc gggagccgtg
3901 ctccttggaa cgcaaagggc cgaggagcat ctggttttca tggcaaagct ctgctccaga
3961 gctcctttaa catctgctaa ttaagtgcaa taaatttttc tagaaaatgg caaagatgac
4021 ttccaggtgg atattgctct cttacggtgt tggggatgcc agaacaccac ttggttttat
4081 ttttctaagt gcatgtgatg tgatagagtg tgtggggctc tgtgtccttc cctgggagct
4141 ggcattccag cgggcccctc tctttacctt tgttggggga aggaggcaag agagaaattc
4201 cttcttccca gccagagagg gcagaagcag accgtagccc attggcctta tgtgcgtgtg
4261 tgcgtgcgag tgtgtcactg ctggtgggcc ggagtgatgt ggtgggaggg aagccgggaa
4321 tgtatccttt tcagacaaaa ttaaatattt tgaaatgaga aaaaaaaaaa aaaaa
//