LOCUS BC039245 4073 bp mRNA linear HUM 08-FEB-2007
DEFINITION Homo sapiens dermatan sulfate epimerase, mRNA (cDNA clone MGC:33055
IMAGE:5272885), complete cds.
ACCESSION BC039245
VERSION BC039245.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4073)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4073)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: e Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7019520.
FEATURES Location/Qualifiers
source 1..4073
/db_xref="H-InvDB:HIT000052169_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33055 IMAGE:5272885"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4073
/gene="DSE"
/gene_synonym="DSEPI"
/db_xref="GeneID:29940"
/db_xref="HGNC:HGNC:21144"
/db_xref="MIM:605942"
CDS 197..3073
/gene="DSE"
/gene_synonym="DSEPI"
/codon_start=1
/product="dermatan sulfate epimerase"
/protein_id="AAH39245.1"
/db_xref="GeneID:29940"
/db_xref="HGNC:HGNC:21144"
/db_xref="MIM:605942"
/translation="MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHP
MLYFSRAEVAELQLRAASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDYSARWNEIF
GNNLGALAMFCVLYPENIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFAT
AYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSL
VLMNQGYLQEAYLWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLV
QRHFNINHFGHPWLKQHFAFMYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDKFVM
RNGSGNWLADQIRRNRVVEGPGTPSKGQRWCTLHTEFLWYDGSLKSVPPPDFGTPTLH
YFEDWGVVTYGSALPAEINRSFLSFKSGKLGGRAIYDIVHRNKYKDWIKGWRNFNAGH
EHPDQNSFTFAPNGVPFITEALYGPKYTFFNNVLMFSPAVSKSCFSPWVGQVTEDCSS
KWSKYKHDLAASCQGRVVAAEEKNGVVFIRGEGVGAYNPQLNLKNVQRNLILLHPQLL
LLVDQIHLGEESPLETAASFFHNVDVPFEETVVDGVHGAFIRQRDGLYKMYWMDDTGY
SEKATFASVTYPRGYPYNGTNYVNVTMHLRSPITRAAYLFIGPSIDVQSFTVHGDSQQ
LDVFIATSKHAYATYLWTGEATGQSAFAQVIADRHKILFDRNSAIKSSIVPEVKDYAA
IVEQNLQHFKPVFQLLEKQILSRVRNTASFRKTAERLLRFSDKRQTEEAIDRIFAISQ
QQQQQSKSKKNRRAGKRYKFVDAVPDIFAQIEVNEKKIRQKAQILAQKELPIDEDEEM
KDLLDFADVTYEKHKNGGLIKGRFGQARMVTTTHSRAPSLSASYTRLFLILNIAIFFV
MLAMQLTYFQRAQSLHGQRCLYAVLLIDSCILLWLYSSCSQSQC"
BASE COUNT 1216 a 834 c 905 g 1118 t
ORIGIN
1 cggcggacga cccaccttga gatgcatcta gcgactgctc ccagcatgta ggagcagttg
61 taaaatcaca gccgtaacag tgcctgctct ccagtgtctg aaaacaaatg tttttctggt
121 cttcactttt ttgaggcagg aaggatcttt cgaagatggt ttggctgcct tggagatttg
181 gagatctgat gccacgatga ggactcacac acggggggct cccagtgtgt ttttcatata
241 tttgctttgc tttgtgtcag cctacatcac cgacgagaac ccagaagtta tgattccctt
301 caccaatgcc aactacgaca gccatcccat gctgtacttc tccagggcag aagtggcgga
361 gctgcagctc agggctgcca gctcgcacga gcacattgca gcccgcctca cggaggctgt
421 gcacacgatg ctgtccagcc ccttggaata cctccctccc tgggatccca aggactacag
481 tgcccgctgg aatgaaattt ttggaaacaa cttgggtgcc ttggcaatgt tctgtgtgct
541 gtatcctgag aacattgaag cccgagacat ggccaaagac tacatggaga ggatggcagc
601 gcagcctagt tggttggtga aagatgctcc ttgggatgag gtcccgcttg ctcactccct
661 ggttggtttt gccactgctt atgacttctt gtacaactac ctgagcaaga cacaacagga
721 gaagtttctt gaagtgattg ccaatgcctc agggtatatg tatgaaactt catacaggag
781 aggatgggga tttcaatacc tgcacaatca tcagcccacc aactgtatgg ctttgctcac
841 gggaagccta gtcctgatga atcaaggata tcttcaagaa gcctacttat ggaccaaaca
901 agttctgacc atcatggaga aatctctggt cttgctcagg gaggtgacgg atggctccct
961 ctatgaagga gttgcgtatg gcagctacac cactagatca ctcttccaat acatgtttct
1021 cgtccagagg cacttcaaca tcaaccactt tggccatccg tggcttaaac aacactttgc
1081 atttatgtat agaaccatcc tgccagggtt tcaaaggact gtggctattg cggactcaaa
1141 ttacaactgg ttttatggtc cagaaagcca attagtgttc cttgataaat ttgtcatgcg
1201 taatggcagt ggtaactggc tagctgacca aatcagaagg aaccgtgtgg tggaaggtcc
1261 aggaacacca tccaaagggc agcgctggtg cactctgcac acagaatttc tctggtatga
1321 tggcagcttg aaatcggttc ctcctccaga ctttggcacc cctacactgc attattttga
1381 agactggggt gtcgtgactt atggaagtgc actacctgca gaaatcaata gatctttcct
1441 ttccttcaag tctggaaaac tggggggacg tgcaatatat gacattgtcc acagaaacaa
1501 atacaaagat tggatcaaag gatggagaaa ttttaatgca gggcatgaac atcctgatca
1561 aaactcattt acttttgctc ccaatggtgt gcctttcatt actgaggctc tgtacgggcc
1621 aaagtacacc ttcttcaaca atgttttgat gttttcccca gctgtgtcaa agagctgctt
1681 ttctccctgg gtgggtcagg tcacagaaga ctgctcatca aaatggtcta aatacaagca
1741 tgacctggca gctagttgtc aggggagggt ggttgcagca gaggagaaaa atggggtggt
1801 tttcatccga ggagaaggtg tgggagctta taacccccag ctcaacctga agaatgttca
1861 gaggaatctc atcctcctac atccacagct gcttctcctt gtagaccaaa tacacctggg
1921 agaggagagt cccttggaga cagcagcgag cttcttccat aatgtggatg ttccttttga
1981 ggagactgtg gtagatggtg tccatggggc tttcatcagg cagagagatg gtctctataa
2041 aatgtactgg atggacgata ctggctacag cgagaaagca acctttgcct cagtgacata
2101 tcctcggggc tatccctaca acgggacaaa ctatgtgaat gtcaccatgc acctccgaag
2161 tcccatcacc agggcagctt acctcttcat agggccatct atagatgttc agagcttcac
2221 tgtccacgga gactctcagc aactggatgt gttcatagcc accagcaaac atgcctacgc
2281 cacatacctg tggacaggtg aggccacagg acagtctgcc tttgcacagg tcattgctga
2341 tcgtcacaaa attctgtttg accggaattc agccatcaag agcagcattg tccctgaggt
2401 gaaggactat gctgctattg tggaacagaa cttgcagcat tttaaaccag tgtttcagct
2461 gctggagaag cagatactgt cccgagtccg gaacacagct agctttagga agactgctga
2521 acgcctgctg agattttcag ataagagaca gactgaggag gccattgaca ggatttttgc
2581 catatcacag caacagcagc agcaaagcaa gtcaaagaaa aaccgaaggg caggcaaacg
2641 ctataaattt gtggatgctg tccctgatat ttttgcacag attgaagtca atgagaaaaa
2701 gattagacag aaagctcaga ttttggcaca gaaagaacta cccatagatg aagatgaaga
2761 aatgaaagac cttttagatt ttgcagatgt aacatacgag aaacataaaa atgggggctt
2821 gattaaaggc cggtttggac aggcacggat ggtgacaact acacacagca gggccccatc
2881 actgtctgct tcctatacca ggttgttcct gattctgaac attgctattt tctttgtcat
2941 gttggcaatg caactgactt atttccagag ggcccagagc ctacatggcc aaagatgtct
3001 ttatgcagtt cttctcatag atagctgtat tttattatgg ttgtactctt cttgttccca
3061 atcacagtgt tagcactgaa gctataaatt acctggtcat tttgtgatca caagagtcta
3121 tgcaaaaaaa aaaatttctt taccccagat tatcagattt ttttccctca gattcatttt
3181 aacaaattaa gggaagatat tttgacacaa gaaagcagga acgtggagaa attggagcag
3241 gaaaagaaat tatcaaagca atagaaatag cttggtggtc ctatggtgtt tttggaagta
3301 tttggcattg ctaattgagc agtccatata gtactacttt tagaagaaac aaaaagtctg
3361 ttttttaaag taatgttttt tcttatgaga aaaaggttta gatagaattg ggttttatta
3421 atattaattt aatgctatta gcaatttcca tatactatat tgtggaaaag actgaagaat
3481 acaattctga gaaatataaa aaaattttaa tggtatactc atgttgaaag ataaatgttg
3541 ctaagtcctg gtatgatggt gtgagcttcc ttggggaagt acttcttgag ttatgtaact
3601 aacaggatgt tttactacag atctggatgg ctattcagat aacatggcaa aaaatgatag
3661 cagaagatca ttaaaaactt aaaatatatt ttattagaaa acatttatct atgaatgaat
3721 atttccttga tgctggtctc tgcacacata tgcttggtta cttgcatgca ttcattggtt
3781 gttcaataag tgagatgatt acagataact taatactgta ttttccttat atggaaaacc
3841 gttatagacc caataacaac taaacctttc aaaagaaaat attttctatt atgaatgttg
3901 attttcatac caaagaagat ggagagtcta aaatttggat atgattctta tgttttttta
3961 atagaaaacc ttcttcaagt ttattttcct aaataaacat cataattgtg aatttaaaaa
4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagaaa aaaaaaaaaa aaa
//