LOCUS BC039203 5525 bp mRNA linear HUM 08-SEP-2006 DEFINITION Homo sapiens Rap guanine nucleotide exchange factor (GEF) 5, mRNA (cDNA clone MGC:26203 IMAGE:4811483), complete cds. ACCESSION BC039203 VERSION BC039203.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5525) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5525) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 32 Row: i Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, GenomeScan gene prediction. FEATURES Location/Qualifiers source 1..5525 /db_xref="H-InvDB:HIT000052159" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26203 IMAGE:4811483" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..5525 /gene="RAPGEF5" /gene_synonym="GFR" /gene_synonym="KIAA0277" /gene_synonym="MR-GEF" /gene_synonym="REPAC" /db_xref="GeneID:9771" /db_xref="HGNC:HGNC:16862" /db_xref="MIM:609527" CDS 75..1409 /gene="RAPGEF5" /gene_synonym="GFR" /gene_synonym="KIAA0277" /gene_synonym="MR-GEF" /gene_synonym="REPAC" /codon_start=1 /product="RAPGEF5 protein" /protein_id="AAH39203.1" /db_xref="GeneID:9771" /db_xref="HGNC:HGNC:16862" /db_xref="MIM:609527" /translation="MGSSRLRVFDPHLERKDSAAALSDRELPLPTFDVPYFKYIDEED EDDEWSSRSQSSTEDDSVDSLLSDRYVVVSGTPEKILEHLLNDLHLEEVQDKETETLL DDFLLTYTVFMTTDDLCQALLRHYSAKKYQGKEENSDVPRRKRKVLHLVSQWIALYKD WLPEDEHSKMFLKTIYRNVLDDVYEYPILEKELKEFQKILGMHRRHTVDEYSPQKKNK ALFHQFSLKENWLQHRGTVTETEEIFCHVYITEHSYVSVKAKVSSIAQEILLCSQLGK RVQLVKKFIKIAAHCKAQRNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFSELE SLTDPSLNHKAYRDAFKKMKPPKIPFVPLLLKDVTFIHEGNKTFLDNLVNFEKLHMIA DTVRTLRHCRTNQFGDLSPKEHQELKSYVNHLYVIDSQQALFELSHRIEPRV" BASE COUNT 1578 a 1162 c 1191 g 1594 t ORIGIN 1 agttcccagt gaaaggacag ggatggcaag atcttttagc atttagggga tgcctttgtt 61 agtaaccgtt cacaatgggc agctcccggc tgagggtctt tgaccctcat ttggagagga 121 aagattccgc cgcggcgctc tcagaccgag agctgccctt gcctaccttc gatgtgcctt 181 atttcaaata catcgacgag gaggatgagg acgatgaatg gagcagccgc tcgcagtctt 241 ccaccgagga tgactcagtg gactctctgc tctctgacag atatgtggtg gtgtccggga 301 ccccggagaa gattttggag caccttttga atgacttgca cctggaagaa gtccaggaca 361 aagaaacaga gaccctcctg gatgacttcc ttctcacgta cactgtcttc atgacaactg 421 atgacttgtg ccaggctctg ttaaggcact attctgctaa gaagtatcaa ggcaaagagg 481 aaaactcaga tgttccgcgt aggaaacgta aagtcttgca tcttgtttcc cagtggattg 541 ctctgtacaa agactggtta cctgaagatg aacattcaaa aatgttttta aagaccatat 601 ataggaatgt actggatgat gtttatgaat atccaatact tgaaaaagaa ttgaaagaat 661 ttcaaaagat acttggaatg caccgtcgtc acactgtaga tgaatattca ccacaaaaaa 721 agaataaagc ccttttccac caattcagtc ttaaggagaa ctggctccag catagaggaa 781 ctgtgactga aacggaggaa attttctgcc acgtgtatat aacagagcac tcctatgtca 841 gtgtgaaggc aaaagtttcc agtatagccc aagagattct gctctgcagc cagctgggca 901 agcgagtgca gctggtgaaa aaattcatca aaattgcggc tcactgcaaa gcccagagaa 961 acctgaattc tttctttgcc attgtgatgg gtctcaacac tgcttctgtc agtcgactgt 1021 cgcagacctg ggagaaaatc cctgggaagt ttaagaaact tttctctgaa cttgaaagtt 1081 taacagatcc ttccctaaat cacaaagcct acagagatgc attcaaaaag atgaagccac 1141 caaaaatccc tttcgtgccc ttattgctta aagatgtaac atttattcat gaaggaaata 1201 aaactttttt ggataatctt gtcaattttg aaaagctgca tatgatcgca gacactgtcc 1261 gaaccctgag acactgcagg actaaccagt ttggtgacct gtctccaaaa gagcatcaag 1321 agttaaagtc ctatgttaat cacctgtatg tcattgacag ccagcaggct ctgtttgagc 1381 tctcacacag gatcgagcct cgggtgtgag ccccactgcc tcacctcccc tgtatctgca 1441 gcactttgag ctacgggaat gtctatgcca agcacgttgc tttcctgtga gaaaagaagt 1501 tgctgagttt tatcagtata acccaagaca ttcacaggaa agccagccaa agcgtgttca 1561 ggaagtgatg tcagccacca gagaggggga gaggttttct ccatgctact ctcgggacaa 1621 gaaggcagaa ggagagtcag aagcattctt gagatggaga aggctggttt cttatgatca 1681 cattgttgat ccagtccagt tttcaatatg agatgtgcca gcatcaagac aagacaacgt 1741 cttgacatgc aatgaccaaa tatttcatta agagcgtgca tgaaacagga aggagttttt 1801 actttgccta gttttagatt actgtccata agctgtcaaa gaagtcattc ttttgaacac 1861 ctgatgacag agacagcatc tctagatctc cagggaggag aggtttctgt tgatacaacc 1921 tgtgacatca ccaaaagcca cttgtgtcta gggagttagt gaggactgca gctagcatcc 1981 atgctctgat gggcagatga acaatgtcaa ggtgtgcatc actttgcacc acaatcaact 2041 attgacacat gcttgcaggt gaaattagtt tctgtacaac tgatttgcag ctataggcaa 2101 ggtagatgaa gttgctttgc cagtaaggaa aaatagtaat ctttaagaaa ttgactcatt 2161 gtttaatttc tggggatttt ctttatactt ctaagcaggc tcttatcttt tattggacat 2221 aatatgattt tgaaaaagca cagtgcctga cacattgcaa acactcacca actgcttgct 2281 gaggtgacag agtcacaaaa gtctgcattc ttgtgcctga tgatgcattt tgcgtacctc 2341 atacaggctc cttgcccaca ctatggaatg acagcagcca gtgcagggag gttaagtgac 2401 atttaatgag tgaagcactt agcactctct aggtaataag atagtggtaa ttactagtgt 2461 tttggcaaat gaaaaatgcc ctgaaatagc caaatgtctg attaatgttg gcaacttaga 2521 agtcctataa tccaactacc agccaaagca gggagccttt ctataatttg cctttttttt 2581 tttttttttc aaaatctgag tcttctaaaa tcttattatt cccattttta ccaattgagg 2641 ctcctgtagc aaataagacc tcttgatatt ttcaaggact ggttagagga tttctttcaa 2701 ccttcacatg aacaaaacag cctatgggtc aaaataatga aatccacccc tgcctgctag 2761 atacttgtca ccttgctaaa atgcaagggc ctggtccatt cattttccaa atgcaggagt 2821 cttggtgcac ttctcactct tcctgcctgt tcatctcttt catgcccaca cagacctgtt 2881 tcctttttgt ctcatcaacg cctcattcat cctcattact gaggcgtgtc caatgctttt 2941 tgacatcttt atagcagtgc tgtttcctgg gctcaggaac cacactgagc ttgagatact 3001 gctggaagga accatgtgga gagaaggttt gggagaactt tgagagagac ttagtttggc 3061 ccagcatgta aaacttcagt cctgaacatt tatagggttt tatagaaggg catcctccag 3121 ggctggtcca ttcagagaaa tgctgcatgc tgccgtcatg gaatgtggcc cacaggacac 3181 cagagccgtg agaaccggag agcagacttc cctcacggct gggctgagca aaccctccaa 3241 agccctcctc acgcagttac taacaatagc atgggcttac agcacaagca cgtgttctca 3301 cctttttcct atgccctgga ctaaggtttg gccagtgtaa tcatataagg ccatcctgac 3361 attgtttctg tgtttcaaaa tttggatttt tatttacatt agaactacat tgctcctagt 3421 agaacattac ctttagggga ctaattttcc atggagaact atttcagcat attgcatgct 3481 gctcagaccc caagtcagat atgcccacca agccagatga agctacacaa atgtggtatt 3541 taaatgcatt ttgtacagtg acttcagagt atctcacatg acatgggtgt aaactggctg 3601 gggagaaaat gatgcttgtt cacctcttcc tccagccgtg gttaggtggt cctaggggta 3661 gcagagggaa gggaggattt tgtgcagtca agatttgctt ttccatcctt gtcttctgaa 3721 tgtctaaaat ctctgcatct ttctgaagtt taacaactgt ctccagaggt ttgccaggca 3781 gcagctctca gaagtttcca aagctttgca gaatcttaga tctggaatta aagaattcaa 3841 gcccgaattg tgagaaccag atattactca acagaaagct ctttctaagg aatctgagct 3901 gttcactggt ggacagtggt ggggcttgag tgctccttgt taataggatg ggccatgcac 3961 cctctctgga tattcaccaa ggcctcttca gaatagggtt tgttctggct agaagcgtgg 4021 tctagaagat ggctaagctc tttgccagct ctcatttgga gttttattat tgcataaaat 4081 cttcgctcac tctgcaaatc ttacgtaatc tggcaccttc ggcaccaggt ggtgcagggg 4141 cacttctaag tgggctcttt ttgttacagc acaactctca gacagtcctg tgggtctttg 4201 gattcgtcag cattccagca aactagccct gcttagaagt tagcacaaga cggcagaatg 4261 caggaccccg taggcaaaat cacaaccttg ctattaaaaa aaattttttt ttacatacac 4321 atttgcaggt gttccctaga gtgtggtgtt ttgaatttgc tctttgtcat ctgtataatt 4381 gccaaatgat tatagtgata cacatgacct gcattcactt ttttctagtt tccttaatta 4441 tgtttagaat aaattcgttt ccctagaccg agaaccacaa acaggtagtg tggagcatac 4501 accgaattta gaagcatgtg gataaggtca gtgctcacac tgcctagtcc acagggagag 4561 gatgctgcat gaatatatac ttgcctctga gtggaggaga aatcgtggca tgaaagagag 4621 agtaccagtg atgacttctt atccctggag ctgggctttc actgctaccc atatcccagc 4681 cctgcgagtc tgttctagcc agcacagaca ccgcagatcc ggaactgaat gttcctaaat 4741 ggcgcagcca atccaggctt ttcagaaact gggcaaaaac attaaaatgg ggacgatcgg 4801 gtcttccgca gtggtccaac acaggatttc ttttaaatgt ttcaaaaaca tgtccttaaa 4861 atttcagcct gcttcttagc gagtgggcca gttttgctta aaactggtgg gggggcgggg 4921 gggaagtttt taaaaattgc caaaaagtta gatgcaaatg tattactgta taaagcaaag 4981 ctgtatatac taaacatttt ttagcagagt aatatttatt tgcatagtct atttattgta 5041 ttcgtattac actgttatta aatactggga tgaaatcagt gacctgaagc aagaaatctt 5101 gccttttaat gtatcattaa ttagggctgc tgtgatattg tcagcttgca ttaacaatta 5161 gaagatagag aacccgccat cagggtgtct acctaacttc tcagggacta cacttggtag 5221 ttttccacca tttaaagaac tggtaaatat gaaacatttg ttgagttacc agaattgcca 5281 ttaacagtgt tttctttccc atattccatg ctttctgcct ctgtgtatat atataatata 5341 tatgtatatg actgtgctgt gtatttatcg aagctagtaa gcaataattt atatgtaaaa 5401 atggccaagc aatataaggt taaaacttat ataagtaacc cttaccttat cttgtatttt 5461 caattttttt ttaaaactgc ttttccaaat atgagactat gttaaagaca aaaaaaaaaa 5521 aaaaa //