LOCUS BC039203 5525 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens Rap guanine nucleotide exchange factor (GEF) 5, mRNA
(cDNA clone MGC:26203 IMAGE:4811483), complete cds.
ACCESSION BC039203
VERSION BC039203.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5525)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5525)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..5525
/db_xref="H-InvDB:HIT000052159"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26203 IMAGE:4811483"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5525
/gene="RAPGEF5"
/gene_synonym="GFR"
/gene_synonym="KIAA0277"
/gene_synonym="MR-GEF"
/gene_synonym="REPAC"
/db_xref="GeneID:9771"
/db_xref="HGNC:HGNC:16862"
/db_xref="MIM:609527"
CDS 75..1409
/gene="RAPGEF5"
/gene_synonym="GFR"
/gene_synonym="KIAA0277"
/gene_synonym="MR-GEF"
/gene_synonym="REPAC"
/codon_start=1
/product="RAPGEF5 protein"
/protein_id="AAH39203.1"
/db_xref="GeneID:9771"
/db_xref="HGNC:HGNC:16862"
/db_xref="MIM:609527"
/translation="MGSSRLRVFDPHLERKDSAAALSDRELPLPTFDVPYFKYIDEED
EDDEWSSRSQSSTEDDSVDSLLSDRYVVVSGTPEKILEHLLNDLHLEEVQDKETETLL
DDFLLTYTVFMTTDDLCQALLRHYSAKKYQGKEENSDVPRRKRKVLHLVSQWIALYKD
WLPEDEHSKMFLKTIYRNVLDDVYEYPILEKELKEFQKILGMHRRHTVDEYSPQKKNK
ALFHQFSLKENWLQHRGTVTETEEIFCHVYITEHSYVSVKAKVSSIAQEILLCSQLGK
RVQLVKKFIKIAAHCKAQRNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFSELE
SLTDPSLNHKAYRDAFKKMKPPKIPFVPLLLKDVTFIHEGNKTFLDNLVNFEKLHMIA
DTVRTLRHCRTNQFGDLSPKEHQELKSYVNHLYVIDSQQALFELSHRIEPRV"
BASE COUNT 1578 a 1162 c 1191 g 1594 t
ORIGIN
1 agttcccagt gaaaggacag ggatggcaag atcttttagc atttagggga tgcctttgtt
61 agtaaccgtt cacaatgggc agctcccggc tgagggtctt tgaccctcat ttggagagga
121 aagattccgc cgcggcgctc tcagaccgag agctgccctt gcctaccttc gatgtgcctt
181 atttcaaata catcgacgag gaggatgagg acgatgaatg gagcagccgc tcgcagtctt
241 ccaccgagga tgactcagtg gactctctgc tctctgacag atatgtggtg gtgtccggga
301 ccccggagaa gattttggag caccttttga atgacttgca cctggaagaa gtccaggaca
361 aagaaacaga gaccctcctg gatgacttcc ttctcacgta cactgtcttc atgacaactg
421 atgacttgtg ccaggctctg ttaaggcact attctgctaa gaagtatcaa ggcaaagagg
481 aaaactcaga tgttccgcgt aggaaacgta aagtcttgca tcttgtttcc cagtggattg
541 ctctgtacaa agactggtta cctgaagatg aacattcaaa aatgttttta aagaccatat
601 ataggaatgt actggatgat gtttatgaat atccaatact tgaaaaagaa ttgaaagaat
661 ttcaaaagat acttggaatg caccgtcgtc acactgtaga tgaatattca ccacaaaaaa
721 agaataaagc ccttttccac caattcagtc ttaaggagaa ctggctccag catagaggaa
781 ctgtgactga aacggaggaa attttctgcc acgtgtatat aacagagcac tcctatgtca
841 gtgtgaaggc aaaagtttcc agtatagccc aagagattct gctctgcagc cagctgggca
901 agcgagtgca gctggtgaaa aaattcatca aaattgcggc tcactgcaaa gcccagagaa
961 acctgaattc tttctttgcc attgtgatgg gtctcaacac tgcttctgtc agtcgactgt
1021 cgcagacctg ggagaaaatc cctgggaagt ttaagaaact tttctctgaa cttgaaagtt
1081 taacagatcc ttccctaaat cacaaagcct acagagatgc attcaaaaag atgaagccac
1141 caaaaatccc tttcgtgccc ttattgctta aagatgtaac atttattcat gaaggaaata
1201 aaactttttt ggataatctt gtcaattttg aaaagctgca tatgatcgca gacactgtcc
1261 gaaccctgag acactgcagg actaaccagt ttggtgacct gtctccaaaa gagcatcaag
1321 agttaaagtc ctatgttaat cacctgtatg tcattgacag ccagcaggct ctgtttgagc
1381 tctcacacag gatcgagcct cgggtgtgag ccccactgcc tcacctcccc tgtatctgca
1441 gcactttgag ctacgggaat gtctatgcca agcacgttgc tttcctgtga gaaaagaagt
1501 tgctgagttt tatcagtata acccaagaca ttcacaggaa agccagccaa agcgtgttca
1561 ggaagtgatg tcagccacca gagaggggga gaggttttct ccatgctact ctcgggacaa
1621 gaaggcagaa ggagagtcag aagcattctt gagatggaga aggctggttt cttatgatca
1681 cattgttgat ccagtccagt tttcaatatg agatgtgcca gcatcaagac aagacaacgt
1741 cttgacatgc aatgaccaaa tatttcatta agagcgtgca tgaaacagga aggagttttt
1801 actttgccta gttttagatt actgtccata agctgtcaaa gaagtcattc ttttgaacac
1861 ctgatgacag agacagcatc tctagatctc cagggaggag aggtttctgt tgatacaacc
1921 tgtgacatca ccaaaagcca cttgtgtcta gggagttagt gaggactgca gctagcatcc
1981 atgctctgat gggcagatga acaatgtcaa ggtgtgcatc actttgcacc acaatcaact
2041 attgacacat gcttgcaggt gaaattagtt tctgtacaac tgatttgcag ctataggcaa
2101 ggtagatgaa gttgctttgc cagtaaggaa aaatagtaat ctttaagaaa ttgactcatt
2161 gtttaatttc tggggatttt ctttatactt ctaagcaggc tcttatcttt tattggacat
2221 aatatgattt tgaaaaagca cagtgcctga cacattgcaa acactcacca actgcttgct
2281 gaggtgacag agtcacaaaa gtctgcattc ttgtgcctga tgatgcattt tgcgtacctc
2341 atacaggctc cttgcccaca ctatggaatg acagcagcca gtgcagggag gttaagtgac
2401 atttaatgag tgaagcactt agcactctct aggtaataag atagtggtaa ttactagtgt
2461 tttggcaaat gaaaaatgcc ctgaaatagc caaatgtctg attaatgttg gcaacttaga
2521 agtcctataa tccaactacc agccaaagca gggagccttt ctataatttg cctttttttt
2581 tttttttttc aaaatctgag tcttctaaaa tcttattatt cccattttta ccaattgagg
2641 ctcctgtagc aaataagacc tcttgatatt ttcaaggact ggttagagga tttctttcaa
2701 ccttcacatg aacaaaacag cctatgggtc aaaataatga aatccacccc tgcctgctag
2761 atacttgtca ccttgctaaa atgcaagggc ctggtccatt cattttccaa atgcaggagt
2821 cttggtgcac ttctcactct tcctgcctgt tcatctcttt catgcccaca cagacctgtt
2881 tcctttttgt ctcatcaacg cctcattcat cctcattact gaggcgtgtc caatgctttt
2941 tgacatcttt atagcagtgc tgtttcctgg gctcaggaac cacactgagc ttgagatact
3001 gctggaagga accatgtgga gagaaggttt gggagaactt tgagagagac ttagtttggc
3061 ccagcatgta aaacttcagt cctgaacatt tatagggttt tatagaaggg catcctccag
3121 ggctggtcca ttcagagaaa tgctgcatgc tgccgtcatg gaatgtggcc cacaggacac
3181 cagagccgtg agaaccggag agcagacttc cctcacggct gggctgagca aaccctccaa
3241 agccctcctc acgcagttac taacaatagc atgggcttac agcacaagca cgtgttctca
3301 cctttttcct atgccctgga ctaaggtttg gccagtgtaa tcatataagg ccatcctgac
3361 attgtttctg tgtttcaaaa tttggatttt tatttacatt agaactacat tgctcctagt
3421 agaacattac ctttagggga ctaattttcc atggagaact atttcagcat attgcatgct
3481 gctcagaccc caagtcagat atgcccacca agccagatga agctacacaa atgtggtatt
3541 taaatgcatt ttgtacagtg acttcagagt atctcacatg acatgggtgt aaactggctg
3601 gggagaaaat gatgcttgtt cacctcttcc tccagccgtg gttaggtggt cctaggggta
3661 gcagagggaa gggaggattt tgtgcagtca agatttgctt ttccatcctt gtcttctgaa
3721 tgtctaaaat ctctgcatct ttctgaagtt taacaactgt ctccagaggt ttgccaggca
3781 gcagctctca gaagtttcca aagctttgca gaatcttaga tctggaatta aagaattcaa
3841 gcccgaattg tgagaaccag atattactca acagaaagct ctttctaagg aatctgagct
3901 gttcactggt ggacagtggt ggggcttgag tgctccttgt taataggatg ggccatgcac
3961 cctctctgga tattcaccaa ggcctcttca gaatagggtt tgttctggct agaagcgtgg
4021 tctagaagat ggctaagctc tttgccagct ctcatttgga gttttattat tgcataaaat
4081 cttcgctcac tctgcaaatc ttacgtaatc tggcaccttc ggcaccaggt ggtgcagggg
4141 cacttctaag tgggctcttt ttgttacagc acaactctca gacagtcctg tgggtctttg
4201 gattcgtcag cattccagca aactagccct gcttagaagt tagcacaaga cggcagaatg
4261 caggaccccg taggcaaaat cacaaccttg ctattaaaaa aaattttttt ttacatacac
4321 atttgcaggt gttccctaga gtgtggtgtt ttgaatttgc tctttgtcat ctgtataatt
4381 gccaaatgat tatagtgata cacatgacct gcattcactt ttttctagtt tccttaatta
4441 tgtttagaat aaattcgttt ccctagaccg agaaccacaa acaggtagtg tggagcatac
4501 accgaattta gaagcatgtg gataaggtca gtgctcacac tgcctagtcc acagggagag
4561 gatgctgcat gaatatatac ttgcctctga gtggaggaga aatcgtggca tgaaagagag
4621 agtaccagtg atgacttctt atccctggag ctgggctttc actgctaccc atatcccagc
4681 cctgcgagtc tgttctagcc agcacagaca ccgcagatcc ggaactgaat gttcctaaat
4741 ggcgcagcca atccaggctt ttcagaaact gggcaaaaac attaaaatgg ggacgatcgg
4801 gtcttccgca gtggtccaac acaggatttc ttttaaatgt ttcaaaaaca tgtccttaaa
4861 atttcagcct gcttcttagc gagtgggcca gttttgctta aaactggtgg gggggcgggg
4921 gggaagtttt taaaaattgc caaaaagtta gatgcaaatg tattactgta taaagcaaag
4981 ctgtatatac taaacatttt ttagcagagt aatatttatt tgcatagtct atttattgta
5041 ttcgtattac actgttatta aatactggga tgaaatcagt gacctgaagc aagaaatctt
5101 gccttttaat gtatcattaa ttagggctgc tgtgatattg tcagcttgca ttaacaatta
5161 gaagatagag aacccgccat cagggtgtct acctaacttc tcagggacta cacttggtag
5221 ttttccacca tttaaagaac tggtaaatat gaaacatttg ttgagttacc agaattgcca
5281 ttaacagtgt tttctttccc atattccatg ctttctgcct ctgtgtatat atataatata
5341 tatgtatatg actgtgctgt gtatttatcg aagctagtaa gcaataattt atatgtaaaa
5401 atggccaagc aatataaggt taaaacttat ataagtaacc cttaccttat cttgtatttt
5461 caattttttt ttaaaactgc ttttccaaat atgagactat gttaaagaca aaaaaaaaaa
5521 aaaaa
//