LOCUS BC039169 1702 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens keratin 16, mRNA (cDNA clone MGC:21296 IMAGE:4752995),
complete cds.
ACCESSION BC039169
VERSION BC039169.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1702)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1702)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Cleaver, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: o Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 15431309.
FEATURES Location/Qualifiers
source 1..1702
/db_xref="H-InvDB:HIT000052148"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21296 IMAGE:4752995"
/tissue_type="Skin, squamous cell carcinoma"
/clone_lib="NCI_CGAP_Skn4"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1702
/gene="KRT16"
/gene_synonym="CK16"
/gene_synonym="K16"
/gene_synonym="K1CP"
/gene_synonym="KRT16A"
/gene_synonym="NEPPK"
/db_xref="GeneID:3868"
/db_xref="HGNC:HGNC:6423"
/db_xref="MIM:148067"
CDS 51..1472
/gene="KRT16"
/gene_synonym="CK16"
/gene_synonym="K16"
/gene_synonym="K1CP"
/gene_synonym="KRT16A"
/gene_synonym="NEPPK"
/codon_start=1
/product="keratin 16"
/protein_id="AAH39169.1"
/db_xref="GeneID:3868"
/db_xref="HGNC:HGNC:6423"
/db_xref="MIM:148067"
/translation="MTTCSRQFTSSSSMKGSCGIGGGIGGGSSRISSVLAGGSCRAPS
TYGGGLSVSSRFSSGGACGLGGGYGGGFSSSSSFGSGFGGGYGGGLGAGFGGGLGAGF
GGGFAGGDGLLVGSEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPSE
IKDYSPYFKTIEDLRNKIIAATIENAQPILQIDNARLAADDFRTKYEHELALRQTVEA
DVNGLRRVLDELTLARTDLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVNVEMDA
APGVDLSRILNEMRDQYEQMAEKNRRDAETWFLSKTEELNKEVASNSELVQSSRSEVT
ELRRVLQGLEIELQSQLSMKASLENSLEETKGRYCMQLSQIQGLIGSVEEQLAQLRCE
MEQQSQEYQILLDVKTRLEQEIATYRRLLEGEDAHLSSQQASGQSYSSREVFTSSSSS
SSRQTRPILKEQSSSSFSQGQSS"
BASE COUNT 398 a 476 c 517 g 311 t
ORIGIN
1 tttccttctt tcagccaact gctcactcgc tcacctccct ccttggcacc atgaccacct
61 gcagccgcca gttcacctcc tccagctcca tgaagggctc ctgcggcatc ggaggcggca
121 tcgggggcgg ctccagccgc atctcctccg tcctggccgg agggtcctgc cgtgccccca
181 gcacctacgg gggcggcctg tctgtctcct ctcgcttctc ctctggggga gcctgcgggc
241 tggggggcgg ctatggcggt ggcttcagca gcagcagcag ctttggtagt ggcttcgggg
301 gaggatatgg tggtggcctt ggtgctggct tcggtggtgg cttgggtgct ggctttggtg
361 gtggttttgc tggtggtgat gggcttctgg tgggcagtga gaaggtgacc atgcagaacc
421 tcaatgaccg cctggcctcc tacctggaca aggtgcgtgc tctggaggag gccaacgccg
481 acctggaagt gaagatccgt gactggtacc agaggcagcg gcccagtgag atcaaagact
541 acagtcccta cttcaagacc atcgaggacc tgaggaacaa gatcattgcg gccaccattg
601 agaatgcgca gcccattttg cagattgaca atgccaggct ggcagccgat gacttcagga
661 ccaagtatga gcatgaactg gccctgcggc agactgtgga ggccgacgtc aatggcctgc
721 gccgggtgtt ggatgagctg accctggcca ggactgacct ggagatgcag atcgaaggcc
781 tgaaggagga gctggcctac ctgaggaaga accacgagga ggagatgctt gctctgagag
841 gtcagaccgg cggagatgtg aacgtggaga tggatgctgc acctggcgtg gacctgagcc
901 gcatcctgaa tgagatgcgt gaccagtacg agcagatggc agagaaaaac cgcagagacg
961 ctgagacctg gttcctgagc aagaccgagg agctgaacaa agaagtggcc tccaacagcg
1021 aactggtaca gagcagccgc agtgaggtga cggagctccg gagggtgctc cagggcctgg
1081 agattgagct gcagtcccag ctcagcatga aagcatccct ggagaacagc ctggaggaga
1141 ccaaaggccg ctactgcatg cagctgtccc agatccaggg actgattggc agtgtggagg
1201 agcagctggc ccagctacgc tgtgagatgg agcagcagag ccaggagtac cagatcttgc
1261 tggatgtgaa gacgcggctg gagcaggaga ttgccaccta ccgccgcctg ctggagggcg
1321 aggatgccca cctttcctcc cagcaagcat ctggccaatc ctattcttcc cgcgaggtct
1381 tcacctcctc ctcgtcctct tcgagccgtc agacccggcc catcctcaag gagcagagct
1441 catccagctt cagccagggc cagagctcct agaactgagc tgcctctacc acagcctcct
1501 gcccaccagc tggcctcacc tcctgaaggc ccgggtcagg accctgctct cctggcgcag
1561 ttcccagcta tctcccctgc tcctctgctg gtggtgggct aataaagctg actttctggt
1621 tgatgcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa aa
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