LOCUS BC039154 1013 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens chromosome 16 open reading frame 79, mRNA (cDNA clone
MGC:21830 IMAGE:4213860), complete cds.
ACCESSION BC039154
VERSION BC039154.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1013)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1013)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC039154.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: g Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222374.
FEATURES Location/Qualifiers
source 1..1013
/db_xref="H-InvDB:HIT000052145"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21830 IMAGE:4213860"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1013
/gene="C16orf79"
/gene_synonym="MGC21830"
/db_xref="GeneID:283870"
/db_xref="HGNC:HGNC:28309"
CDS 178..864
/gene="C16orf79"
/gene_synonym="MGC21830"
/codon_start=1
/product="chromosome 16 open reading frame 79"
/protein_id="AAH39154.1"
/db_xref="GeneID:283870"
/db_xref="HGNC:HGNC:28309"
/translation="MEPASCCAERPKPGPTGVKTKPSCGGWRAVGLLLLLLLLVLAAV
GIVAGGLLGSAQGPPKPRLQTLRMTLPSPHMPRPNQTILVDVARNAATITVTPPQSNH
SWAVLFDGQSGCICYRPEEHQVCFLRLMEDSDRETLRLLVDTSKVQEAWVPSQDTHHT
QELLAVQGSLEVDPAQAGALVQRLCMRTPIYWARRAEGPRRQRLIYLCIDICFPSNIC
VSVCFYYLPD"
BASE COUNT 216 a 312 c 322 g 163 t
ORIGIN
1 gacaggcatc ccccaggtgg gaggaggggc tgtcctggct ctgacctgga tatcagatcc
61 agagctgagg gggaggtgca gggtcaggag gggaggggtt ctgttctgag tttcccctgg
121 ccaaggctgc agacaaggga cgcagacaat cggcacattg tgagcagggg ctgcaggatg
181 gaaccagcaa gctgctgtgc tgagcgcccc aaacctgggc ctacaggggt gaagaccaag
241 ccctcctgcg ggggctggag agccgtgggc ctgctcctgc tgctgctgct gctggtgctg
301 gccgctgtgg ggattgtggc tggagggctt cttggctctg ctcagggccc tcccaagcca
361 aggctgcaga cgctgcgaat gaccctcccg agcccccaca tgccccggcc caaccaaacc
421 atcctggtgg acgtggcccg gaacgcggcg accatcacag tgaccccacc tcagagcaac
481 cacagctggg cggtgctgtt cgacgggcag agcggctgca tctgttaccg ccctgaggag
541 caccaggtct gcttcctccg cctgatggag gacagtgatc gggagaccct gcggctgctg
601 gtggatacct ccaaggtcca agaggcttgg gtccccagcc aggacaccca ccacacccag
661 gagctgctgg cagtgcaggg gagcctcgaa gtggaccccg cccaggcggg ggctttggtg
721 cagcgcctgt gcatgaggac ccccatctac tgggcccggc gagcagaggg gccccggaga
781 cagcggctga tttatctctg catcgacatc tgcttcccga gcaacatctg cgtgtcggtc
841 tgcttttatt acctcccaga ctgagccccc gacctggccc agcctggccc gtccccaatc
901 cagtgggctg gccaggccac ctgcaccagg gaggacagct gctggcaggg actaataaac
961 ccttccacct ggcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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