LOCUS BC039115 4149 bp mRNA linear HUM 09-SEP-2005
DEFINITION Homo sapiens ubiquitin specific peptidase 38, mRNA (cDNA clone
MGC:43052 IMAGE:5258804), complete cds.
ACCESSION BC039115
VERSION BC039115.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4149)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4149)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: p Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31559774.
FEATURES Location/Qualifiers
source 1..4149
/db_xref="H-InvDB:HIT000095524"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43052 IMAGE:5258804"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4149
/gene="USP38"
/gene_synonym="HP43.8KD"
/gene_synonym="KIAA1891"
/db_xref="GeneID:84640"
CDS 535..3549
/gene="USP38"
/gene_synonym="HP43.8KD"
/gene_synonym="KIAA1891"
/codon_start=1
/product="USP38 protein"
/protein_id="AAH39115.1"
/db_xref="GeneID:84640"
/translation="MDKILEGLVSSSHPLPLKRVIVRKVVESAEHWLDEAQCEAMFDL
TTRLILEGQDPFQRQVGHQVLEAYARYHRPEFESFFNKTFVLGLLHQGYHSLDRKDVA
ILDYIHNGLKLIMSCPSVLDLFSLLQVEVLRMVCERPEPQLCARLSDLLTDFVQCIPK
GKLSITFCQQLVRTIGHFQCVSTQERELREYVSQVTKVSNLLQNIWKAEPATLLPSLQ
EVFASISSTDASFEPSVALASLVQHIPLQMITVLIRSLTTDPNVKDASMTQALCRMID
WLSWPLAQHVDTWVIALLKGLAAVQKFTILIDVTLLKIELVFNRLWFPLVRPGALAVL
SHMLLSFQHSPEAFHLIVPHVVNLVHSFKNDGLPSSTAFLVQLTELIHCMMYHYSGFP
DLYEPILEAIKDFPKPSEEKIKLILNQSAWTSQSNSLASCLSRLSGKSETGKTGLINL
GNTCYMNSVIQALFMATDFRRQVLSLNLNGCNSLMKKLQHLFAFLAHTQREAYAPRIF
FEASRPPWFTPRSQQDCSEYLRFLLDRLHEEEKILKVQASHKPSEILECSETSLQEVA
SKAAVLTETPRTSDGEKTLIEKMFGGKLRTHIRCLNCRSTSQKVEAFTDLSLAFCPSS
SLENMSVQDPASSPSIQDGGLMQASVPGPSEEPVVYNPTTAAFICDSLVNEKTIGSPP
NEFYCSENTSVPNESNKILVNKDVPQKPGGETTPSVTDLLNYFLAPEILTGDNQYYCE
NCASLQNAEKTMQITEEPEYLILTLLRFSYDQKYHVRRKILDNVSLPLVLELPVKRIT
SFSSLSESWSVDVDFTDLSENLAKKLKPSGTDEASCTKLVPYLLSSVVVHSGISSESG
HYYSYARNITSTDSSYQMYHQSEALALASSQSHLLGRDSPSAVFEQDLENKEMSKEWF
LFNDSRVTFTSFQSVQKITSRFPKDTAYVLLYKKQHSTNGLSGNNPTSGLWINGDPPL
QKELMDAITKDNKLYLQVSWKYKLYLLKILNN"
BASE COUNT 1141 a 946 c 911 g 1151 t
ORIGIN
1 acttcaaaat ccgggtcaaa gggtgtcgct tcggtctctt ctccccggct gatcccagca
61 ctctccgtga cagcgcctcc tgactcagcc caggaccggc ttcttctcac gacctgctgg
121 agactggacg cccacacctg acccggaact cggaggcgtg cttcctccac ccgccggcta
181 gcagccccgg gccctgagct cccgccgacg ccgctggggg gcccgacagg cccctcggcg
241 ctgatgctga gtgggatcga gggcccgggg cggcggcgga gtacgggcct ctggcgcctt
301 aggccagccg caggtgtcgg ttcttaggct ctccaggctc gctagctccc gccccggctt
361 ggatgggtct ccctgcgcca taaatgtggc tgctgaggcg gcggtggccg tggcccgtcg
421 cgctgctgct gcggcgctcc aagttcatct ccgccccggg gctctcctgc cccacctcgg
481 ggctgccgcc acccgctcct tatcccctgg ccctggcctt gcagcgtggc gacaatggac
541 aagatcctgg agggccttgt gagttcctcg catcccctgc ccctcaagcg ggtgattgtg
601 cggaaggtgg tggaatcggc ggagcactgg ctagacgagg cgcagtgcga ggccatgttt
661 gacctgacga cccggctcat cctggagggc caggaccctt tccagcggca ggtggggcac
721 caggtgctgg aggcctacgc acgataccac cggccagagt tcgagtcctt cttcaacaag
781 accttcgtgt tgggcctcct tcatcagggc taccactctc tggacaggaa ggatgtagcc
841 atcctggact acattcacaa cggcctgaag ctgattatga gctgtccgtc ggtgctggat
901 ctctttagcc tcctgcaggt agaggtgtta cggatggtgt gtgagaggcc ggagccgcag
961 ctctgtgccc gactgagcga ccttctgacc gactttgtgc aatgcatccc caaggggaaa
1021 ttgtccatca cgttctgtca acagctggtt cgaacgatag gccatttcca gtgcgtgtcc
1081 acccaggaaa gagagctgcg ggaatatgtc tcccaggtga caaaagtgag taacttgctg
1141 cagaacatct ggaaggccga gcctgccaca ctactgcctt ccctgcaaga agtttttgca
1201 agcatctctt ccacagatgc atcatttgaa ccttctgtag cattggcaag ccttgtgcag
1261 catattcctc ttcagatgat tacagttctc atcaggagcc ttactacgga tccaaatgta
1321 aaagatgcaa gtatgaccca agccctttgc agaatgattg actggctatc ctggccattg
1381 gctcagcatg tggatacatg ggtaattgca ctcctgaaag gactggcagc tgtccagaag
1441 tttactattt tgatagatgt tactttgctg aaaatagaac tggtttttaa tcgactttgg
1501 tttcctcttg tgagacctgg tgctcttgca gttctttctc acatgctgct tagctttcag
1561 cattctccag aggcgttcca tttgattgtt cctcatgtgg ttaatttggt tcattctttc
1621 aaaaatgatg gtctgccttc aagtacagcc ttcttagtac aattaacaga attgatacac
1681 tgtatgatgt atcattattc tggatttcca gatctctatg aacctattct ggaggcaata
1741 aaggattttc ctaagcccag tgaagagaag attaagttaa ttctcaatca aagtgcctgg
1801 acttctcaat ccaattcttt ggcgtcttgc ttgtctagac tttctggaaa atctgaaact
1861 gggaaaactg gtcttattaa cctaggaaat acatgttata tgaacagtgt tatacaagcc
1921 ttgtttatgg ccacagattt caggagacaa gtattatctt taaatctaaa tgggtgcaat
1981 tcattaatga aaaaattaca gcatcttttt gcctttctgg cccatacaca gagggaagca
2041 tacgcacctc ggatattctt tgaggcttcc agacctccat ggtttactcc cagatcacag
2101 caagactgtt ctgaatacct cagatttctc cttgacaggc tccatgaaga agaaaagatc
2161 ttgaaagttc aggcctcaca caagccttct gaaattctgg aatgcagtga aacttcttta
2221 caggaagtag ctagtaaagc agcagtacta acagagaccc ctcgtacaag tgacggtgag
2281 aagactttaa tagaaaaaat gtttggagga aaactacgaa ctcacatacg ttgtttgaac
2341 tgcaggagta cctcacaaaa agtggaagcc tttacagatc tttcgcttgc cttttgtcct
2401 tcctcttctt tggaaaacat gtctgtccaa gatccagcat catcacccag tatacaagat
2461 ggtggtctaa tgcaagcctc tgtacccggt ccttcagaag aaccagtagt ttataatcca
2521 acaacagctg ccttcatctg tgactcactt gtgaatgaaa aaaccatagg cagtcctcct
2581 aatgagtttt actgttctga aaacacttct gtccctaacg aatctaacaa gattcttgtt
2641 aataaagatg tacctcagaa accaggaggt gaaaccacac cttcagtaac tgacttacta
2701 aattattttt tggctccaga gattcttact ggtgataacc aatattattg tgaaaactgt
2761 gcctctctgc aaaatgctga gaaaactatg caaatcacgg aggaacctga ataccttatt
2821 cttactctcc tgagattttc atatgatcag aagtatcatg tgagaaggaa aattttagac
2881 aatgtatcac tgccactggt tttggagttg ccagttaaaa gaattacttc tttctcttca
2941 ttgtcagaaa gttggtctgt agatgttgac ttcactgatc ttagtgagaa ccttgctaaa
3001 aaattaaagc cttcagggac tgatgaagct tcctgcacaa aattggtgcc ctatctatta
3061 agttccgttg tggttcactc tggtatatcc tctgaaagtg ggcattacta ttcttatgcc
3121 agaaatatca caagtacaga ctcttcatat cagatgtacc accagtctga ggctctggca
3181 ttagcatcct cccagagtca tttactaggg agagatagtc ccagtgcagt ttttgaacag
3241 gatttggaaa ataaggaaat gtcaaaagaa tggtttttat ttaatgacag tagagtgaca
3301 tttacttcat ttcagtcagt ccagaaaatt acgagcaggt ttccaaagga cacagcttat
3361 gtgcttttgt ataaaaaaca gcatagtact aatggtttaa gtggtaataa cccaaccagt
3421 ggactctgga taaatggaga cccacctcta cagaaagaac ttatggatgc tataacaaaa
3481 gacaataaac tatatttaca ggtaagttgg aaatacaagc tttatttgtt gaaaatatta
3541 aacaattgac acagttaaat gagtaccctc attttgaaat ctaacatgag tttttatgaa
3601 attctgaaat ataggtctgg atttacatga agtattctca acctgtataa ctaaattgcc
3661 tttctaatat tgtgacaatt taaatgaaaa gtggcaatta gatgtaatgc agaagacttt
3721 atttgttcct tacaaaagat ggctcattct gaaatcatgc catacaaaat acagaaagtt
3781 tacaaaagtg gacatatcct ccctcttccc ctcagcctca cccaccagag gaaataactg
3841 ctaaatgtgg tatttatgcc ctcaagactt ttgtgtaaat gttttaaggg ctgtttattg
3901 atatttaggt ggataagatt aaaaaacact aaaatgtaga ctatgtaaag aaaggatatt
3961 catattcttt gaggatgtgg ttagtaaaac caaggagata atagaacaat tgtaaatcga
4021 agccaaggaa tggttttata tgagataaat ttattcataa atatactttt ttcaaggagt
4081 tagtgatttt attacttaaa taaaggctaa taaaaagtta aaattcttgc tgaaaaaaaa
4141 aaaaaaaaa
//