LOCUS BC039072 1797 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens C-type lectin domain family 1, member A, mRNA (cDNA
clone MGC:34328 IMAGE:5178017), complete cds.
ACCESSION BC039072
VERSION BC039072.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1797)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1797)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: o Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37577102.
FEATURES Location/Qualifiers
source 1..1797
/db_xref="H-InvDB:HIT000052131"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34328 IMAGE:5178017"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1797
/gene="CLEC1A"
/gene_synonym="CLEC1"
/gene_synonym="MGC34328"
/db_xref="GeneID:51267"
/db_xref="HGNC:HGNC:24355"
/db_xref="MIM:606782"
CDS 50..892
/gene="CLEC1A"
/gene_synonym="CLEC1"
/gene_synonym="MGC34328"
/codon_start=1
/product="C-type lectin domain family 1, member A"
/protein_id="AAH39072.1"
/db_xref="GeneID:51267"
/db_xref="HGNC:HGNC:24355"
/db_xref="MIM:606782"
/translation="MQAKYSSTRDMLDDDGDTTMSLHSQGSATTRHPEPRRTEHRAPS
STWRPVALTLLTLCLVLLIGLAALGLLFFQYYQLSNTGQDTISQMEERLGNTSQELQS
LQVQNIKLAGSLQHVAEKLCRELYNKAGAHRCSPCTEQWKWHGDNCYQFYKDSKSWED
CKYFCLSENSTMLKINKQEDLEFAASQSYSEFFYSYWTGLLRPDSGKAWLWMDGTPFT
SELFHIIIDVTSPRSRDCVAILNGMIFSKDCKELKRCVCERRAGMVKPESLHVPPETL
GEGD"
BASE COUNT 542 a 421 c 365 g 469 t
ORIGIN
1 gcccagggca atccgaccac atttcactct caccgctgta ggaatccaga tgcaggccaa
61 gtacagcagc acgagggaca tgctggatga tgatggggac accaccatga gcctgcattc
121 tcaaggctct gccacaactc ggcatccaga gccccggcgc acagagcaca gggctccctc
181 ttcaacgtgg cgaccagtgg ccctgaccct gctgactttg tgcttggtgc tgctgatagg
241 gctggcagcc ctggggcttt tgttttttca gtactaccag ctctccaata ctggtcaaga
301 caccatttct caaatggaag aaagattagg aaatacgtcc caagagttgc aatctcttca
361 agtccagaat ataaagcttg caggaagtct gcagcatgtg gctgaaaaac tctgtcgtga
421 gctgtataac aaagctggag cacacaggtg cagcccttgt acagaacaat ggaaatggca
481 tggagacaat tgctaccagt tctataaaga cagcaaaagt tgggaggact gtaaatattt
541 ctgccttagt gaaaactcta ccatgctgaa gataaacaaa caagaagacc tggaatttgc
601 cgcgtctcag agctactctg agtttttcta ctcttattgg acagggcttt tgcgccctga
661 cagtggcaag gcctggctgt ggatggatgg aacccctttc acttctgaac tgttccatat
721 tataatagat gtcaccagcc caagaagcag agactgtgtg gccatcctta atgggatgat
781 cttctcaaag gactgcaaag aattgaagcg ttgtgtctgt gagagaaggg caggaatggt
841 gaagccagag agcctccatg tcccccctga aacattaggc gaaggtgact gattcgccct
901 ctgcaactac aaatagcaga gtgagccagg cggtgccaaa gcaagggcta gttgagacat
961 tgggaaatgg aacataatca ggaaagacta tctctctgac tagtacaaaa tgggttctcg
1021 tgtttcctgt tcaggatcac cagcatttct gagcttgggt ttatgcacgt atttaacagt
1081 cacaagaagt cttatttaca tgccaccaac caacctcaga aacccataat gtcatctgcc
1141 ttcttggctt agagataact tttagctctc tttcttctca atgtctaata tcacctccct
1201 gttttcatgt cttccttaca cttggtggaa taagaaactt tttgaagtag aggaaataca
1261 ttgaggtaac atccttttct ctgacagtca agtagtccat cagaaattgg cagtcacttc
1321 ccagattgta ccagcaaata cacaaggaat tctttttgtt tgtttcagtt catactagtc
1381 ccttcccaat ccatcagtaa agaccccatc tgccttgtcc atgccgtttc ccaacaggga
1441 tgtcacttga tatgagaatc tcaaatctca atgccttata agcattcctt cctgtgtcca
1501 ttaagactct gataattgtc tcccctccat aggaatttct cccaggaaag aaatatatcc
1561 ccatctccgt ttcatatcag aactaccgtc cccgatattc ccttcagaga gattaaagac
1621 cagaaaaaag tgagcctctt catctgcacc tgtaatagtt tcagttccta ttttcttcca
1681 ttgacccata tttatacctt tcaggtactg aagatttaat aataataaat gtaaatactg
1741 tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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