LOCUS BC039004 3211 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens carnitine O-octanoyltransferase, mRNA (cDNA clone
MGC:47608 IMAGE:5242962), complete cds.
ACCESSION BC039004
VERSION BC039004.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3211)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3211)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542324.
FEATURES Location/Qualifiers
source 1..3211
/db_xref="H-InvDB:HIT000052112"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47608 IMAGE:5242962"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3211
/gene="CROT"
/gene_synonym="COT"
/db_xref="GeneID:54677"
/db_xref="HGNC:HGNC:2366"
/db_xref="MIM:606090"
CDS 186..2024
/gene="CROT"
/gene_synonym="COT"
/codon_start=1
/product="carnitine O-octanoyltransferase"
/protein_id="AAH39004.1"
/db_xref="GeneID:54677"
/db_xref="HGNC:HGNC:2366"
/db_xref="MIM:606090"
/translation="MENQLAKSTEERTFQYQDSLPSLPVPSLEESLKKYLESVKPFAN
QEEYKKTEEIVQKFQSGIGEKLHQKLLERAKGKRNWLEEWWLNVAYLDVRIPSQLNVN
FAGPAAHFEHYWPPKEGTQLERGSITLWHNLNYWQLLRKEKVPVHKVGNTPLDMNQFR
MLFSTCKVPGITRDSIMNYFRTESEGRSPNHIVVLCRGRAFVFDVIHEGCLVTPPELL
RQLTYIHKKCHSEPDGPGIAALTSEERTRWAKAREYLIGLDPENLALLEKIQSSLLVY
SMEDSSPHVTPEDYSEIIAAILIGDPTVRWGDKSYNLISFSNGVFGCNCDHAPFDAMI
MVNISYYVDEKIFQNEGRWKGSEKVRDIPLPEELIFIVDEKVLNDINQAKAQYLREAS
DLQIAAYAFTSFGKKLTKNKMLHPDTFIQLALQLAYYRLHGHPGCCYETAMTRHFYHG
RTETMRSCTVEAVRWCQSMQDPSVNLRERQQKMLQAFAKHNKMMKDCSAGKGFDRHLL
GLLLIAKEEGLPVPELFTDPLFSKSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFF
YHIRDDRFVVACSAWKSCPETDAEKLVQLTFCAFHDMIQLMNSTHL"
BASE COUNT 996 a 575 c 701 g 939 t
ORIGIN
1 gggagcgagc cggtgctgct gcaggctgag gctgcggcag aggcggcgag gcgcgggcgg
61 tgaggacgga cagtcaccga cttagtccag ttccctgtga tctcaaaaca attgttgcag
121 caggctcctg gcagtctcaa gcagttcatc ttcttggtgt actggtttcc tattgtgatt
181 ttatcatgga aaatcaattg gctaaatcaa ctgaagaacg aacatttcag taccaggatt
241 ctcttccatc actgcctgtt ccttcacttg aagaatcatt aaaaaaatac cttgaatcag
301 tgaaaccatt tgcaaatcaa gaagaatata agaaaactga agaaatagtt caaaaatttc
361 aaagtgggat tggagaaaaa ttgcaccaga aattgcttga aagagcaaaa ggaaaaagaa
421 attggctgga agagtggtgg ctgaatgttg cctatctgga tgttcgtata ccatcacaat
481 tgaatgtcaa ctttgcgggt cctgcagctc attttgaaca ctactggcct ccaaaggaag
541 ggactcaatt agaaagagga agtataactc tttggcataa cttgaactac tggcagctat
601 taagaaaaga aaaagtgcct gttcataaag ttggaaatac tcctctagat atgaatcaat
661 tccgaatgct attttctacc tgcaaggttc caggaattac tagagactcc attatgaatt
721 attttaggac tgagagtgaa gggcgttccc caaaccacat tgtagtgctg tgtcgaggcc
781 gagcttttgt ctttgatgta atacatgaag gatgtttggt caccccgcca gagcttctca
841 gacaactgac atatatccac aagaagtgcc atagtgaacc tgatggacct gggattgcag
901 cattaactag tgaggagcga actcgatggg ctaaggcacg agaatatctg attggtcttg
961 atccagagaa cttggctttg ttagaaaaaa ttcagagtag tttactggta tattccatgg
1021 aggatagcag tccacatgta acaccagagg attattctga gattattgca gccatcctta
1081 ttggagatcc aacagtacgc tggggtgaca aatcctataa cttgatttcc ttttctaatg
1141 gagtatttgg ctgtaattgt gatcatgctc cttttgatgc aatgattatg gtgaacatca
1201 gttattatgt ggatgagaaa atttttcaga atgaaggaag atggaagggt tcagagaagg
1261 tacgagatat accacttcca gaagagctca ttttcattgt ggatgagaaa gttttaaatg
1321 acatcaacca agctaaagcc cagtatctca gggaggcatc tgatctacag attgcggctt
1381 atgcctttac atcttttggc aaaaagctaa ccaagaacaa gatgcttcac ccggatacgt
1441 ttattcagct tgcacttcag ctggcctatt acagacttca tggacaccct ggttgttgct
1501 atgaaacagc tatgacaaga catttttatc atggccgtac agagactatg cgatcatgca
1561 cagttgaagc agtgaggtgg tgccagtcca tgcaggatcc ttctgtcaat cttcgtgagc
1621 ggcagcaaaa gatgttacaa gcttttgcaa agcataataa aatgatgaaa gattgttcag
1681 ctggaaaagg atttgatcgt caccttttag gtctcttact catagcaaaa gaggaaggtc
1741 ttcctgttcc agaactcttt acggacccac ttttttccaa aagcggagga ggtggaaatt
1801 ttgttctctc aacaagtctg gttggctatt tacgagtcca gggagtggta gttcccatgg
1861 tacacaatgg ttatggattt ttctaccata tcagagatga caggtttgtt gtggcctgtt
1921 cagcctggaa atcctgtccc gagactgatg cggaaaagct agttcagctg actttttgtg
1981 cttttcatga tatgatacag ctgatgaact ctactcatct ttagagatga atcatctatt
2041 aagcacttac caaaacatat cattaaactg agtgctggga gtgagttggt aatatgagat
2101 gggaaggaat gttgacttgc taacattcct ttaacaagtt aagaaaactt gttaaatgta
2161 gaaattagta gaatcatgct ctctaaattt attctgccat agaaggtaga aatattttta
2221 agctcctctg atgcagcagc aatgcaaatt atgacatagt gaatatagaa ctatgcagta
2281 tttaagcctc aacaatccaa atctacaaac tttaacaatg caagtcttac tctaattttt
2341 aagtattttt gttggtactt acatgggtta taaatcctct ctctggacat caatgtagag
2401 tccatctttc aagcacttta atttttttag ctgccaaagg gtatgaatta cattattgta
2461 tgctaatttc cctgaaatca atgccttcta tgttcaccac agggatacaa gcctgttatg
2521 tttgatggga aagaccacta caatctaatg gtgatctaaa ataacttttt tgggctgggt
2581 gcagtggctc atgcctataa tcttagcact ttgggaggcc aaggtaggag gattgcttga
2641 agctaggagt ttgagaccag cctgggcaac agggtaaggt cctgtctcta caagatcaaa
2701 aacttagccg ggtatggtgg tgcatgtgtg cctgtagtcc aagctacttg aaggctgaga
2761 caggaggatc ggttgagccc aggaggttgt ggctgcagtg agctgtgatg tgcccttatg
2821 ctatagcctg ggcaagagcg tgagaccctg tctcaaagaa gaaaaaaaga gaaaaataac
2881 tcttttgaac aaacagacaa attagctagt agtatggaga tgtataccct ctattacaca
2941 cataaaaccg taacaaaatt cattgtggtg tattataatt agttttgtga atagaaaaat
3001 aaagcactta tgtttaaatt tgttacagtg acttttaaag gattaatgtt gaatcacatt
3061 gtcagaattt tttcctcctc gctgttcaat tttgtagttt ttactctcaa aaaatgaaat
3121 tctcaaaatt atatagcttt ttgttttgtt tgaataaatg attcattcct gttaaaaaaa
3181 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//