LOCUS BC038856 2313 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 9 open reading frame 89, mRNA (cDNA clone
MGC:47555 IMAGE:5215640), complete cds.
ACCESSION BC038856
VERSION BC038856.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2313)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2313)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: e Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21362043
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2313
/db_xref="H-InvDB:HIT000052084"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47555 IMAGE:5215640"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2313
/gene="C9orf89"
/gene_synonym="bA370F5.1"
/gene_synonym="BinCARD"
/db_xref="GeneID:84270"
/db_xref="HGNC:HGNC:28148"
CDS 117..803
/gene="C9orf89"
/gene_synonym="bA370F5.1"
/gene_synonym="BinCARD"
/codon_start=1
/product="C9orf89 protein"
/protein_id="AAH38856.1"
/db_xref="GeneID:84270"
/db_xref="HGNC:HGNC:28148"
/translation="MTDQTYCDRLVQDTPFLTGHGRLSEQQVDRIILQLNRYYPQILT
NKEAEKFRNPKASLRVRLCDLLSHLQRSGERDCQEFYRALYIHAQPLHSRLPSRHALR
KFHITNHACLVLARGGHPSLPLMAWMSSMTTQVCCSPGLASPLASAPPQRPPSGPEGR
VWQAQAVQMLVSVSHFLPLPPSLSHGSFHTAWGILYVHSCPSFSNLIPRGSLHVCVDS
NLVPTAAWRS"
BASE COUNT 429 a 766 c 643 g 475 t
ORIGIN
1 cgagcacggc ccgcgggcgg cgttcgctgg agctggtgga ccgggcggct gaccgagggg
61 cggacgcgcg gcggggcaga ccgctgggga ctgcgggcgg cgctgtgtcc gtcgccatga
121 cagatcagac ctattgtgac cgcctggtgc aggacacgcc tttcctgaca ggccatgggc
181 gcttgagtga gcagcaggtg gacaggatca tcctccagct gaaccgttac tacccacaga
241 tccttaccaa caaggaggcg gaaaagttcc ggaaccccaa ggcatccttg cgtgtgcggc
301 tctgtgacct cctgagccac ctgcagcgga gcggtgagcg ggactgccag gagttctacc
361 gagccctgta tatccatgcc cagcccctgc acagccgcct gcccagccgc cacgctctgc
421 gtaagttcca catcaccaac catgcatgct tggtgctggc ccggggaggg caccccagcc
481 tgccgttgat ggcatggatg tcctccatga ccacccaagt ctgctgcagc ccaggcctgg
541 catcccctct cgcctcagcc cctccccaga ggccaccctc tggccccgag gggagagtgt
601 ggcaggcaca ggcagtgcag atgttggtct ctgtctccca ctttctcccc cttcctccgt
661 ctctctctca tggcagtttt cacacagcat ggggcatctt atacgtccac tcttgccctt
721 ccttttctaa cctcattcca cggggatccc ttcatgtctg tgtggacagc aaccttgttc
781 ccacagctgc atggcgctcc taggcggtcc cagctggaat tacccaaccc catgacggac
841 cctttcattg cagcgatctg cacacgtgtg ggtgtttcca taggacattg tcaggcacgg
901 atggctggtc cgaagcacgt gcatttcagt tttgaggctc ctgtcctcag gcagtgtgga
961 ctcaggccct gggagtcatg tggatgccag tagcctgggc ccacagagct gctgggatgt
1021 ggggggcata tcaagttgaa gatggcaact ctgatctgac gcctctgtgc tcagggcccc
1081 tggaggaggg gctactgccc cttggccctt agacaacagg acagagacca gagggactgg
1141 gcggcttgtc ccaggctact gggctgtggt ctctgacccc ctggaggcct ccccacgcct
1201 cacagaacac agtgcagacg gtgggcgggg agagctcgag gggaggccca gccctgcagg
1261 tgggactggc tctccctccc cagccacgag tatgccacag ggggctttca aaaccaggca
1321 gggccaagcc ttggccccac tggaggtaga gcaccttctg tggctcccgg gtgcctttag
1381 gcccgtccag gagttggagc agaggagaag acccagactg tgcatagttc cctgaggagg
1441 gctagcctca ggtgccacag cctggttcgg cctggcggcc ccaggacgca gcagcaacct
1501 tgggcttcct gcggggtgac taccttgccc tccggccctg cccgttgact aactatgctc
1561 tgtggttttg tttccagaga actcagattg cacagagcta gactcgggca gccagagcgg
1621 cgagctgagt aacaggggta acacctccct gctgcccctc cctctctctc cctctctctc
1681 cctctctctt taccctcccc agggctccat ctccgcctca ggggcttttc caccccaagt
1741 ctggctccat tcctggcctt ctgttggtga cagacccccc cctaaggtgc tcgtttgggg
1801 gctcttcagg cagcacctca gcctggcacc cccactcccc tgcgcagccc ccaggcctca
1861 ggaccccacc cctctgaggc ccaggggagc cctgttcacg ctggtttctc cccaggaccc
1921 atgagcttcc tggctggcct gggccttgct gtgggactgg ccctgctcct gtactgctat
1981 ccgccagacc ccaagggcct gccagggacc cggcgcgtcc tcggtttctc gcctgtcatc
2041 atcgacagac atgtcagccg ctacctgctg gccttcctgg cagatgacct agggcggctc
2101 tgacagaccc tggacccagg gcctcacctg ccactcaacc aaagagtcct cgagccggcc
2161 cgccaagggg actgctgctt ctttttctaa atgcatattt ttcattattt ataatttgtg
2221 taaaaaacac accttcacct tacaaggtgc tgaccatatt aaatgttcag gttctctcaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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