LOCUS BC038856 2313 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens chromosome 9 open reading frame 89, mRNA (cDNA clone MGC:47555 IMAGE:5215640), complete cds. ACCESSION BC038856 VERSION BC038856.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2313) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2313) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: e Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21362043 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..2313 /db_xref="H-InvDB:HIT000052084" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:47555 IMAGE:5215640" /tissue_type="Blood, adult leukocytes" /clone_lib="NIH_MGC_118" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2313 /gene="C9orf89" /gene_synonym="bA370F5.1" /gene_synonym="BinCARD" /db_xref="GeneID:84270" /db_xref="HGNC:HGNC:28148" CDS 117..803 /gene="C9orf89" /gene_synonym="bA370F5.1" /gene_synonym="BinCARD" /codon_start=1 /product="C9orf89 protein" /protein_id="AAH38856.1" /db_xref="GeneID:84270" /db_xref="HGNC:HGNC:28148" /translation="MTDQTYCDRLVQDTPFLTGHGRLSEQQVDRIILQLNRYYPQILT NKEAEKFRNPKASLRVRLCDLLSHLQRSGERDCQEFYRALYIHAQPLHSRLPSRHALR KFHITNHACLVLARGGHPSLPLMAWMSSMTTQVCCSPGLASPLASAPPQRPPSGPEGR VWQAQAVQMLVSVSHFLPLPPSLSHGSFHTAWGILYVHSCPSFSNLIPRGSLHVCVDS NLVPTAAWRS" BASE COUNT 429 a 766 c 643 g 475 t ORIGIN 1 cgagcacggc ccgcgggcgg cgttcgctgg agctggtgga ccgggcggct gaccgagggg 61 cggacgcgcg gcggggcaga ccgctgggga ctgcgggcgg cgctgtgtcc gtcgccatga 121 cagatcagac ctattgtgac cgcctggtgc aggacacgcc tttcctgaca ggccatgggc 181 gcttgagtga gcagcaggtg gacaggatca tcctccagct gaaccgttac tacccacaga 241 tccttaccaa caaggaggcg gaaaagttcc ggaaccccaa ggcatccttg cgtgtgcggc 301 tctgtgacct cctgagccac ctgcagcgga gcggtgagcg ggactgccag gagttctacc 361 gagccctgta tatccatgcc cagcccctgc acagccgcct gcccagccgc cacgctctgc 421 gtaagttcca catcaccaac catgcatgct tggtgctggc ccggggaggg caccccagcc 481 tgccgttgat ggcatggatg tcctccatga ccacccaagt ctgctgcagc ccaggcctgg 541 catcccctct cgcctcagcc cctccccaga ggccaccctc tggccccgag gggagagtgt 601 ggcaggcaca ggcagtgcag atgttggtct ctgtctccca ctttctcccc cttcctccgt 661 ctctctctca tggcagtttt cacacagcat ggggcatctt atacgtccac tcttgccctt 721 ccttttctaa cctcattcca cggggatccc ttcatgtctg tgtggacagc aaccttgttc 781 ccacagctgc atggcgctcc taggcggtcc cagctggaat tacccaaccc catgacggac 841 cctttcattg cagcgatctg cacacgtgtg ggtgtttcca taggacattg tcaggcacgg 901 atggctggtc cgaagcacgt gcatttcagt tttgaggctc ctgtcctcag gcagtgtgga 961 ctcaggccct gggagtcatg tggatgccag tagcctgggc ccacagagct gctgggatgt 1021 ggggggcata tcaagttgaa gatggcaact ctgatctgac gcctctgtgc tcagggcccc 1081 tggaggaggg gctactgccc cttggccctt agacaacagg acagagacca gagggactgg 1141 gcggcttgtc ccaggctact gggctgtggt ctctgacccc ctggaggcct ccccacgcct 1201 cacagaacac agtgcagacg gtgggcgggg agagctcgag gggaggccca gccctgcagg 1261 tgggactggc tctccctccc cagccacgag tatgccacag ggggctttca aaaccaggca 1321 gggccaagcc ttggccccac tggaggtaga gcaccttctg tggctcccgg gtgcctttag 1381 gcccgtccag gagttggagc agaggagaag acccagactg tgcatagttc cctgaggagg 1441 gctagcctca ggtgccacag cctggttcgg cctggcggcc ccaggacgca gcagcaacct 1501 tgggcttcct gcggggtgac taccttgccc tccggccctg cccgttgact aactatgctc 1561 tgtggttttg tttccagaga actcagattg cacagagcta gactcgggca gccagagcgg 1621 cgagctgagt aacaggggta acacctccct gctgcccctc cctctctctc cctctctctc 1681 cctctctctt taccctcccc agggctccat ctccgcctca ggggcttttc caccccaagt 1741 ctggctccat tcctggcctt ctgttggtga cagacccccc cctaaggtgc tcgtttgggg 1801 gctcttcagg cagcacctca gcctggcacc cccactcccc tgcgcagccc ccaggcctca 1861 ggaccccacc cctctgaggc ccaggggagc cctgttcacg ctggtttctc cccaggaccc 1921 atgagcttcc tggctggcct gggccttgct gtgggactgg ccctgctcct gtactgctat 1981 ccgccagacc ccaagggcct gccagggacc cggcgcgtcc tcggtttctc gcctgtcatc 2041 atcgacagac atgtcagccg ctacctgctg gccttcctgg cagatgacct agggcggctc 2101 tgacagaccc tggacccagg gcctcacctg ccactcaacc aaagagtcct cgagccggcc 2161 cgccaagggg actgctgctt ctttttctaa atgcatattt ttcattattt ataatttgtg 2221 taaaaaacac accttcacct tacaaggtgc tgaccatatt aaatgttcag gttctctcaa 2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa //