LOCUS BC038797 2815 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin beta 15, mRNA (cDNA clone MGC:45997
IMAGE:5767743), complete cds.
ACCESSION BC038797
VERSION BC038797.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2815)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2815)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: p Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14195603.
FEATURES Location/Qualifiers
source 1..2815
/db_xref="H-InvDB:HIT000052068"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45997 IMAGE:5767743"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2815
/gene="PCDHB15"
/gene_synonym="PCDH-BETA15"
/db_xref="GeneID:56121"
/db_xref="HGNC:HGNC:8686"
/db_xref="MIM:606341"
CDS 167..2530
/gene="PCDHB15"
/gene_synonym="PCDH-BETA15"
/codon_start=1
/product="protocadherin beta 15"
/protein_id="AAH38797.1"
/db_xref="GeneID:56121"
/db_xref="HGNC:HGNC:8686"
/db_xref="MIM:606341"
/translation="MEPAGERFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSF
VANLANDLGLGVGELAERGARVVSEDNEQGLQLDLQTGQLILNEKLDREKLCGPTEPC
IMHFQVLLKKPLEVFRAELLVTDINDHSPEFPEREMTLKIPETSSLGTVFPLKKARDL
DVGSNNVQNYNISPNSHFHVSTRTRGDGRKYPELVLDTELDREEQAELRLTLTAVDGG
SPPRSGTVQILILVLDANDNAPEFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGE
ISYSLYYSSQEIDKPFELSSLSGEIRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVS
VKVLDVNDNFPELSISSLTSPIPENSPETEVALFRIRDRDSGENGKMICSIQDDVPFK
LKPSVENFYRLVTEGALDRETRAEYNITITITDLGTPRLKTEQSITVLVSDVNDNAPA
FTQTSYTLFVRENNSPALHIGSVRATDRDSGTNAQVTYSLLPPQDPHLPLTSLVSINT
DNGHLFALQSLDYEALQAFEFRVGATDRGFPALSSEALVRVLVLDANDNSPFVLYPLQ
NGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV
RTARLLSERDVAKHRLVVLVKDNGEPPRSATATLQVLLVDGFSQPYLPLPEAAPAQAQ
ADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVS
GTGTLSQSYQYEVCLTGGSESNDFKFLKPIFPNIVSQDSRRKSEFLE"
BASE COUNT 687 a 738 c 733 g 657 t
ORIGIN
1 gaggaaagcc tgttagcaga gcacggacca gtgtctccgg agaatgctat tctcctacat
61 ttccgaacag gttatcaacg cacagatcga tcactgcctc tgtcccatcg ctccctgaag
121 tagctctgac tccggttcct tgaaaggggc gtgtacagaa gtaaagatgg agcctgcagg
181 ggagcgcttt cccgaacaaa ggcaagtcct gattctcctt cttttactgg aagtgactct
241 ggcaggctgg gaaccccgtc gctattctgt gatggaggaa acagagagag gttcttttgt
301 agccaacctg gccaatgacc tagggctggg agtgggggag ctagccgagc ggggagcccg
361 ggtagtttct gaggataacg aacaaggctt gcagcttgat ctgcagaccg ggcagttgat
421 attaaatgag aagctggacc gggagaagct gtgtggccct actgagccct gtataatgca
481 tttccaagtg ttactgaaaa aacctttgga agtatttcga gctgaactac tagtgacaga
541 cataaacgat cattctcctg agtttcctga aagagaaatg accctgaaaa tcccagaaac
601 tagctccctt gggactgtgt ttcctctgaa aaaagctcgg gacttggacg tgggcagcaa
661 taatgttcaa aactacaata tttctcccaa ttctcatttc catgtttcca ctcgcacccg
721 aggggatggc aggaaatacc cagagctggt gctggacaca gaactggatc gcgaggagca
781 ggccgagctc agattaacct tgacagcggt ggacggtggc tctccacccc gatctggcac
841 cgtccagatc ctcatcttgg tcttggacgc caatgacaat gccccggagt ttgtgcaggc
901 gctctacgag gtgcaggtcc cagagaacag cccagtaggc tccctagttg tcaaggtctc
961 tgctagggat ttagacactg ggacaaatgg agagatatca tactcccttt attacagctc
1021 tcaggagata gacaaacctt ttgagctaag cagcctttca ggagaaattc gactaattaa
1081 aaaactagat tttgagacaa tgtcttcgta tgatctagat atagaggcat ctgatggcgg
1141 gggactttct ggaaaatgct ctgtctctgt taaggtgctg gatgttaacg ataacttccc
1201 ggaactaagt atttcatcac ttaccagccc tattcccgag aattctccag agacagaagt
1261 ggccctgttt aggattagag accgagactc tggggaaaat ggaaaaatga tttgctcaat
1321 tcaggatgat gttcctttta agctaaaacc ttctgttgag aatttctaca ggctggtaac
1381 agaaggggcg ctggacagag agaccagagc cgagtacaac atcaccatca ccatcacaga
1441 cttggggact ccaaggctga aaaccgagca gagcataacc gtgctggtgt cggacgtcaa
1501 tgacaacgcc cccgccttca cccaaacctc ctacaccctg ttcgtccgcg agaacaacag
1561 ccccgccctg cacatcggca gtgtccgcgc aacagacaga gactcgggca ccaacgccca
1621 ggtcacctac tcgctgctgc cgccccagga cccgcacctg cccctcacct ccctggtctc
1681 cattaacacg gacaacggcc acctgttcgc tctccagtcg ctggactacg aggccctgca
1741 ggctttcgag ttccgcgtgg gcgccacaga ccgcggcttc ccggcgctga gcagcgaggc
1801 gctggtgcga gtgctggtgc tggacgccaa cgacaactcg cccttcgtgc tgtacccgct
1861 gcagaacggc tccgcgccct gcaccgagct ggtgccccgg gcggccgagc cgggctacct
1921 ggtgaccaag gtggtggcgg tggacggcga ctcgggccag aacgcctggc tgtcgtacca
1981 gctgctcaag gccacggagc ccgggctgtt cggcgtgtgg gcgcacaatg gcgaggtgcg
2041 caccgccagg ctgctgagcg agcgcgacgt ggccaagcac aggctagtgg tgctggtcaa
2101 ggacaatggc gagcctccgc gctcggccac cgccacgctg caagtgctcc tggtggacgg
2161 cttctctcag ccctacctgc cgctcccaga ggcggccccg gcccaagccc aggccgactc
2221 gcttaccgtc tacctggtgg tggcattggc ctcggtgtct tcgctcttcc tcttctcggt
2281 gttcctgttc gtggcagtgc ggctgtgcag gaggagcagg gcggcctcag tgggtcgctg
2341 ctcggtgccc gagggcccct ttccagggca tctggtggac gtgagcggca ccgggaccct
2401 ttcccagagc taccagtacg aggtgtgtct gacgggaggc tctgaaagta atgatttcaa
2461 gttcttgaag cctatattcc caaatattgt aagccaggac tctaggagga aatcagaatt
2521 tctagaataa tgtaggtatc tgtagctttc cgaccgtctg ttaattttgt cttcctcact
2581 tttcacctta gtttttttta accctttagt aatcttgaat tctacttttt tttaaatttc
2641 tactgttgtc tttagtaatg ttactcattt cctttgtctg attgttagtt ttcaaattat
2701 tgtattatta taaatatttt atatcaggaa agttcatatt tctgaataaa ttaatagtat
2761 tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//