LOCUS BC038754 1667 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens chromosome 12 open reading frame 40, mRNA (cDNA clone
MGC:43595 IMAGE:5269851), complete cds.
ACCESSION BC038754
VERSION BC038754.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1667)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1667)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: i Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734764.
FEATURES Location/Qualifiers
source 1..1667
/db_xref="H-InvDB:HIT000095349"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43595 IMAGE:5269851"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1667
/gene="C12orf40"
/gene_synonym="FLJ40126"
/db_xref="GeneID:283461"
/db_xref="HGNC:HGNC:26846"
CDS 333..1601
/gene="C12orf40"
/gene_synonym="FLJ40126"
/codon_start=1
/product="C12orf40 protein"
/protein_id="AAH38754.2"
/db_xref="GeneID:283461"
/db_xref="HGNC:HGNC:26846"
/translation="MVNQISCKKKIPETVRKPTHVNMNRDIKMPLRKHNLELTMSPHC
VPSKLCLDDTETNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSV
ELPSNRHISKLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSH
KTTRFGTLFERLNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKN
GKEVSNFLEDVNQSTPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTC
VVTSSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDL
STSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGL
DEILMEEGGIYSLKSKRISTKKICQYNCIS"
BASE COUNT 620 a 285 c 326 g 436 t
ORIGIN
1 agaggctgtt gggaggttgg gcctcaggcg gtcgaccaga aggagcttac tcgggccctg
61 acgttgtcag gaggccctgg gggatcctgc tgaagctgcg atttggcgca gagctgagat
121 gtctgagctc tagacacagg gacctcagtg tcaaaagatt tgggaagatg aattgggtcg
181 gggggtcccg gtccagggtt ctgatcaagc aggaaagaag aaagcaaaag gaatattttg
241 aaaaacacag gttaaaatca aaaatgaaat cactgggagt tttatctcct gtcaaaaatt
301 ctgctgtcag cttagacatt cttaacctat atatggtaaa tcagatatct tgcaagaaga
361 aaattcctga aactgtgaga aaaccaaccc atgtgaacat gaatagagac ataaaaatgc
421 ccctaagaaa gcataattta gaacttacaa tgtcgcctca ctgtgtacct tctaaactct
481 gccttgatga tacagaaacc aatgtaaact gtcaaagact aagtagcaag gaagatcttg
541 gcccagtcca gtcacaaggc atggactcat atagtatgct tcaccctcag ttcagcaaaa
601 tagagaactg cagtttcact ccatcatctt tttcagtgga gttaccttct aacagacata
661 tttcaaaact aaatttcaca tctggaatag cacctactcc tcagaaactt gcatatgaaa
721 aaaagcagaa tgaccagcgc agtactgtta actgttctga ttccttgctt tccaaattaa
781 ataaaagtca agatgttttc agtccatcac ataaaactac acgatttggg acattatttg
841 aaagattaaa cagtctagga aataggaatt tacttactaa aagccctgct gtaattatgg
901 atgaagattg tagaagcacg gatgaaataa gacagtcaga ctacattact gaaaaacact
961 caatacagca tatttggggg aaaaatggaa aggaagtttc aaattttctt gaagatgtga
1021 accagtctac tcctaacctt ctatcagaga attgtgactc ttttgttagt caaaatatga
1081 tcaatgtatt aaacatagat gagcaaagga taaagaaaac atttaacaag tgtgattatg
1141 atagtatggg agatacttgt gtagtcacta gttctgataa aaaccatgtc actgacagat
1201 gcattagaaa catttttaca gttccagagt tgacttttag taattcgact ttgaataaaa
1261 caagttatcc agaaaaatgt cagccaaaca agaagtatca gagagagtat aacaaaaatg
1321 aaagaaatga tcttagtaca tcttttgaga acgattacta cccaagcagc tctgaaagaa
1381 aagaaaaatt tgaaaatgat taccaagaga agacaccaca gaaaagtatt cagaaatatc
1441 cagcaaactc tatgggaaat ataccttcgg aagaattgca ctctaagcag tcatgggact
1501 ttggacttga tgagattctg atggaagaag gaggaatata ttctttaaaa agcaagcgaa
1561 tatctactaa gaaaatctgt cagtataact gtataagtta attttactct attttaaaaa
1621 ctaacaatta aatagaaatc agttaaattt gaaaaaaaaa aaaaaaa
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