LOCUS BC038709 1786 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox D8, mRNA (cDNA clone MGC:24105
IMAGE:4614350), complete cds.
ACCESSION BC038709
VERSION BC038709.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1786)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1786)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: g Column: 13.
FEATURES Location/Qualifiers
source 1..1786
/db_xref="H-InvDB:HIT000052061"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24105 IMAGE:4614350"
/tissue_type="Kidney"
/clone_lib="NIH_MGC_75"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1786
/gene="HOXD8"
/gene_synonym="HOX5.4"
/db_xref="GeneID:3234"
/db_xref="HGNC:HGNC:5139"
/db_xref="MIM:142985"
CDS 478..1347
/gene="HOXD8"
/gene_synonym="HOX5.4"
/codon_start=1
/product="homeobox D8"
/protein_id="AAH38709.1"
/db_xref="GeneID:3234"
/db_xref="HGNC:HGNC:5139"
/db_xref="MIM:142985"
/translation="MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRH
AAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPA
AAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYP
DCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAPGRRRGRQTYSRFQTLELEKEFLFN
PYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEA
QELEEDRAEGLTN"
BASE COUNT 426 a 505 c 514 g 341 t
ORIGIN
1 agagccgggg tttgtaaacc gaggccagag tgtccccgtg ggccgagcgc acttttttct
61 tgtccgggtg cgctcagtca ctggtgcctg agaggaaaca gtggaggcag cggggcaggt
121 cgcctggggc gtcggcgatt atattgcggc cgagccgggg cgcgccggga aaggccggga
181 gggcggcggc gcgcgggggc tgggcgaggc cccgcgaccc gcgagggagg cggcgcgaag
241 ccgaggcggc gggcgcaaga gccgggcatg agcgcccagt agctgagcgc ccgcggctgc
301 ctggcctcag aagcgacgcg cgagcgcggg cgggcggcag cagcgacgta gcccggcggt
361 cccggcggcg agagcagccg ccccacaggc ccccgcggca gtgcggccga gtcgaggctc
421 gctctctggc tgcttagcgc cgcccgcccg cccggggccg ccgccgctga cgccccaatg
481 agttcgtact tcgtgaaccc gctgtactcc aagtacaagg cggcggctgc ggcggcggcg
541 gcggcgggcg aggccatcaa tcccacttac tacgactgtc acttcgcgcc cgaggtcggc
601 ggccgtcacg ccgccgccgc agcagccctg cagctctatg gcaacagcgc cgccggcttc
661 ccgcacgcgc ccccgcaggc gcacgcgcac ccgcacccgt ccccgccgcc ctccgggact
721 gggtgcggcg gtagggaagg ccggggccag gagtacttcc accccggcgg gggcagcccg
781 gccgctgcct accaggccgc cccccctcct cctccgcatc ctccgcctcc gccgccacct
841 cccccctgcg gcgggattgc ctgtcacggg gagcccgcga agttttacgg atacgataac
901 ttacagagac agccgatttt tacgacccag caagaggccg agctggtaca atatcctgac
961 tgtaaatcgt ccagtggtaa tattggcgag gacccagacc acttaaatca gagctcgtct
1021 ccttctcaaa tgtttccgtg gatgagacca caagctcctg gtagacgaag aggaagacaa
1081 acctacagtc gcttccaaac tctagagttg gaaaaggaat ttctttttaa cccctatctg
1141 accaggaaaa gaagaatcga ggtttcccac gccctagccc tcaccgagag acaggtaaaa
1201 atctggttcc agaacaggag aatgaaatgg aaaaaggaaa acaacaagga caaatttccc
1261 gtttcccggc aggaggtgaa ggacggggaa acgaaaaagg aagcccaaga gctggaggaa
1321 gacagagccg aaggcctgac aaattaactt ctacctttaa aatttaccac agactattaa
1381 aactaataat caccatatgc tgtggacacc acctattttc tttgttggaa aggaccttac
1441 ctgtgtttca agctaccttc atgtcactgc tcttgaggtt ttctgtgctt tgagagggat
1501 ttgggtgttt aaaaaagttt ctagtatcac atagaagctg tccttgagct gtcctatgga
1561 agggtaattt gatactgacc ttgtagctat atttttataa tggtttttaa tgtctgagct
1621 agtgatttgc ctcaacaacg taaacttcct aatgattagc acttaataat tgcatataaa
1681 atgctttatt aattaaacaa gtgcacttga acattttaat atttgtggtg agtaaattaa
1741 aaggagttta ttaactaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
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