LOCUS BC038598 2411 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens serine hydroxymethyltransferase 1 (soluble), mRNA (cDNA clone MGC:46169 IMAGE:4523709), complete cds. ACCESSION BC038598 VERSION BC038598.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2411) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2411) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 78 Row: b Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22547185. FEATURES Location/Qualifiers source 1..2411 /db_xref="H-InvDB:HIT000052057" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:46169 IMAGE:4523709" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2411 /gene="SHMT1" /gene_synonym="CSHMT" /gene_synonym="MGC15229" /gene_synonym="MGC24556" /gene_synonym="SHMT" /db_xref="GeneID:6470" /db_xref="HGNC:HGNC:10850" /db_xref="MIM:182144" CDS 69..1520 /gene="SHMT1" /gene_synonym="CSHMT" /gene_synonym="MGC15229" /gene_synonym="MGC24556" /gene_synonym="SHMT" /codon_start=1 /product="serine hydroxymethyltransferase 1 (soluble)" /protein_id="AAH38598.1" /db_xref="GeneID:6470" /db_xref="HGNC:HGNC:10850" /db_xref="MIM:182144" /translation="MTMPVNGAHKDADLWSSHDKMLAQPLKDSDVEVYNIIKKESNRQ RVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQ AYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKI SATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIA DENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSV DPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVAN CRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGD RSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKE RLAGDKYQAAVQALREEVESFASLFPLPGLPDF" BASE COUNT 630 a 606 c 615 g 560 t ORIGIN 1 ccacgcgtcc ggtggcaccg gcggcggcgt aggacggagg cgtcgctagg cagcttcgaa 61 ccagtgcaat gacgatgcca gtcaacgggg cccacaagga tgctgacctg tggtcctcac 121 atgacaagat gctggcacaa cccctcaaag acagtgatgt tgaggtttac aacatcatta 181 agaaggagag taaccggcag agggttggat tggagctgat tgcctcggag aatttcgcca 241 gccgagcagt tttggaggcc ctaggctctt gcttaaataa caaatactct gaggggtacc 301 cgggccagag atactatggc gggactgagt ttattgatga actggagacc ctctgtcaga 361 agcgagccct gcaggcctat aagctggacc cacagtgctg gggggtcaac gtccagccct 421 actcaggctc ccctgcaaac tttgctgtgt acactgccct ggtggaaccc catgggcgca 481 tcatgggcct ggaccttccg gatgggggcc acctgaccca tgggttcatg acagacaaga 541 agaaaatctc tgccacgtcc atcttctttg aatctatgcc ctacaaggtg aacccagata 601 ctggctacat caactatgac cagctggagg agaacgcacg cctcttccac ccgaagctga 661 tcatcgcagg aaccagctgc tactcccgaa acctggaata tgcccggcta cggaagattg 721 cagatgagaa cggggcgtat ctcatggcgg acatggctca catcagcggg ctggtggcgg 781 ctggcgtggt gccctcccca tttgaacact gccatgtggt gaccaccacc actcacaaga 841 ccctgcgagg ctgccgagct ggcatgatct tctacaggaa aggagtgaaa agtgtggatc 901 ccaagactgg caaagagatt ctgtacaacc tggagtctct tatcaattct gctgtgttcc 961 ctggcctgca gggaggtccc cacaaccacg ccattgctgg ggttgctgtg gcactgaagc 1021 aagctatgac tctggaattt aaagtttatc aacaccaggt ggtggccaac tgcagggctc 1081 tgtctgaggc cctgacggag ctgggctaca aaatagtcac aggtggttct gacaaccatt 1141 tgatccttgt ggatctccgt tccaaaggca cagatggtgg aagggctgag aaggtgctag 1201 aagcctgttc tattgcctgc aacaagaaca cctgtccagg tgacagaagc gctctgcggc 1261 ccagtggact gcggctgggg accccagcac tgacgtcccg tggacttttg gaaaaagact 1321 tccaaaaagt agcccacttt attcacagag ggatagagct gaccctgcag atccagagcg 1381 acactggtgt cagagccacc ctgaaagagt tcaaggagag actggcaggg gataagtacc 1441 aggcggccgt gcaggctctc cgggaggagg ttgagagctt cgcctctctc ttccctctgc 1501 ctggcctgcc tgacttctaa aggagcgggc ccactctgga cccacctggc gccacagagg 1561 aagctgcctg ccggaggacc cccacctgag agatggatga gctgctccaa aggggaactg 1621 ttgacactcg ggccctttga gggggtttct tttggacttt tttcatgttt tcttcacaaa 1681 tcaaaatttg tttaagtctc attgttagta attctgggac aggttattaa aggatttaaa 1741 tttgaacctg gctttctcac agctggacat aattctagga aaataaaata ctatgtcgcc 1801 acttggtcat aatcatttag atggtggtgt agggcaaagc tgttagaaag attgtagcgt 1861 tttactctcc ctgggctttc ctccgccttg ctgcaacaga gaggaaatgc ccatgtccac 1921 agcttgtaca cactgccccc tcactatctt gttatccagt ggcatgccaa aggagaactg 1981 aattagcttc tgaggcttct gctgtaaatc agaagtgtat gttagtcaag agtaaacaag 2041 atgcacccag tatggtggga gggttttgct gtcagtagct caaagtatgg tgtagaaatg 2101 gcctcctccc tccatcctgg gaagtcccag tcccatcctg gtgtgagaat caaccaggct 2161 ttcctgctcc acctgagata accaactccc tcccgtaatc aggaagccaa atgtcacctt 2221 cccaaagaaa ttttattttc acgtagctga agtgcaaaac atagatgacc atttttaata 2281 agcacaatca aatttttaac cacagaatgt ctacaagaat tatagcttta aaaaatacaa 2341 ccaattttta tatttcaaaa atatttgaac tcaaataaat taatttctta aaaagtaaaa 2401 aaaaaaaaaa a //