LOCUS BC038516 3684 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens PHD finger protein 13, mRNA (cDNA clone MGC:43399 IMAGE:5266750), complete cds. ACCESSION BC038516 VERSION BC038516.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3684) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3684) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 73 Row: p Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24432092. FEATURES Location/Qualifiers source 1..3684 /db_xref="H-InvDB:HIT000052049" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43399 IMAGE:5266750" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3684 /gene="PHF13" /gene_synonym="MGC43399" /gene_synonym="PHF5" /gene_synonym="SPOC1" /db_xref="GeneID:148479" /db_xref="HGNC:HGNC:22983" CDS 383..1285 /gene="PHF13" /gene_synonym="MGC43399" /gene_synonym="PHF5" /gene_synonym="SPOC1" /codon_start=1 /product="PHD finger protein 13" /protein_id="AAH38516.1" /db_xref="GeneID:148479" /db_xref="HGNC:HGNC:22983" /translation="MDSDSCAAAFHPEEYSPSCERRRTVEDFNKFCTFVLAYAGYIPY PKEELPLRSSPSPANSTAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAK PSNFLLDRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDI PQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGND EDIMVDSDDDSWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK CRDSKFDIRRSNRSRTGSRKLFLD" BASE COUNT 800 a 963 c 1012 g 909 t ORIGIN 1 agtcgccacc cagactacat ttcccgacag gcctcccggc tctcccgccc tccctcccga 61 aacacgagcc gaactgggcg tcaggtcggg gagccggtcg ggttcccgct caccgccgcc 121 gccgccgccc cctgcagcca ctctcccgcc tctaccgccg cgggagctgc atcgtccact 181 ccggtcggcg gtggaaccgc cagtccgggg tcacagagct tgagaagcga cgcgctgagc 241 cccccatcac ctccagcccg ggcgacccct cccgggtccg ccctcgccct gcgcagccgc 301 ccgagccccc agccccgggc ggccccgctc cagcatccca gctcctgcac tctcgcagcc 361 gccgccgccc cccgcccgga acatggactc tgactcttgc gccgccgcct tccacccgga 421 ggaatactcc cccagttgcg agaggcgcag gaccgtggaa gacttcaaca aattctgcac 481 ctttgtcttg gcctatgctg gctacatccc ttatccgaag gaggaactcc ctttaaggag 541 cagccccagc cctgctaaca gcactgctgg taccattgac agcgacggct gggacgcggg 601 tttctcagac atcgcgtcct cagtgccctt gccagtctct gaccgctgct ttagccacct 661 gcagcctact ctcttgcagc gagccaagcc cagtaacttc ctgctggaca gaaagaaaac 721 ggacaagctg aagaagaaga agaagaggaa gcgcagggac agtgatgcgc ctgggaaaga 781 ggggtacagg gggggcttgc tgaagctgga agccgctgac ccctacgtgg agacccccac 841 gagtcccacc ttgcaggata tcccccaggc tcccagcgac ccctgctcgg gctgggactc 901 cgatactccc tcgagtggat cttgtgccac tgtgtcacct gatcaggtca aagaaataaa 961 aactgaaggc aaacggacta tcgtccggca gggaaagcag gtggtgttcc gagatgagga 1021 cagcactggc aatgatgagg acatcatggt ggactcagat gacgattcct gggacctcgt 1081 gacctgcttc tgcatgaagc catttgccgg ccgccccatg atcgagtgta atgagtgcca 1141 cacctggatt cacctgtcct gtgcgaaaat ccggaaatcc aatgttccag aagtgtttgt 1201 ctgccaaaag tgccgggact ccaagtttga catccgccgt tccaaccgct cgcggacggg 1261 ctcccggaag ctgttcctgg actgactgct ggctggcgag gaggctgcga gcgtggaatc 1321 ggaagcgacc gtgggctttt ttgcccttct cttagttgag cacagaaccc tcagctctgg 1381 tgcgggcaga tccctgccat ttaggtgcct aagcaaaagg acaggctgtc caaggtagaa 1441 actgtacata gccggtgacc gaatgcgacc tttgccagcc agagctgctg ccagagctgc 1501 gttccctgca gtggaggtgg actggacacc cacgtgcagc gggtttggct catttgaaaa 1561 tgagggtccg tggtagctgt gcgttttgct atcattgcta agagattccc gctgattggg 1621 ctcagtgcca gctgttattc tgcttccact gtgttgggga gaggtgttcg gtttccccag 1681 cctgttaatg aacagccata cgtgtaagct ttttcttgag tgttaagtct tttaccaaaa 1741 gtgtctgtac agcagccatc caagttgccc ctacttagtg gcttgccctc tgcctgcctc 1801 agctgctgcc tgaccggctg ggggaggcac tggcgggagg cctcgggctc ccctggaagg 1861 gcgctgggct ggcgggtcag ctggtggttc ttaggtttcc ttctgtttgt taaaagggac 1921 aatgtggcca cttctctgtg gaaagggagt tggttggggg gttgagatgg cccgtgttca 1981 taactcagtt tcctgttttg cacgatgtaa aaaccctgtc tttttgcacg atacagccaa 2041 aagtattggc tgatttcttg ctgagtgccc tcttagttgg tgtgtgaggt cttggtgggc 2101 tcaggccagc tgtttgcgag tgtgggaact cataggttct gtctttgtct cttcctttca 2161 cctcattctg gtagcagcat aaaggttagg caatcactgg gacccgcatg gtgttcctcc 2221 aaagaatagg gtaaaggaga gctgggaggg agccctctcc gttgggtgac tcttgtgtgc 2281 cctttagaca ggctggcctg ccggttccac agggtacagt taggacttga gtctttcttt 2341 ttctgttttg agttggtgag tgagtgatag ggtaacatgg gccttcagga tgaccccttg 2401 gaactgtgcc gagttcctta aatctcagct gggatcctgg acctgggagg cccctgtgag 2461 ggccagctct ggaaaaacct gggagttgat gccggaggct gtggaagaac tctgctcgag 2521 ggcagggtgc cctggaacac tggtagttct ggggctggga gggagagggg ctccggcttt 2581 ctctgaaatg aacactgctc ttcagcagtt caagtacttg ttctcaaaac attttctaat 2641 tgattggtag gttttcataa gcattgtttc tttaaggcat ggaaagggaa gaatgctcaa 2701 gcaagtcatg tttgttttca gtgggatggg cccgcgttct cactgctggg ggcttcccct 2761 tcatgtggca cctttgtgcc aggccaccag gcagactctt cccaccttct cccactgaag 2821 caccaagagg cttgaaccgt aatttggcta atcagaggca ttttttttgt cctagtatct 2881 ttcacacttg tccaaccgtc ttattttttt aaaagttctg ttgcttgtat taacacgaaa 2941 ctagagagaa atagtttctg aagccagttt attgtgaaga tccccaaggg ggaggttcgg 3001 tagagaaaaa tagtaagctg gtttagaaac tgacgagggc aaacagccag gacgcattgg 3061 agaggaattt gccaaagatc taccctgaga taacgcctgt ccagtgtctt caccacgtga 3121 ataaccagcg ctccaaagtg tttttctgct ttgaaaaaaa aaattccaca agcttttaaa 3181 ggtgcattta agaatccatg tgactttaga atggaactgc cggccctggc aactgtcacg 3241 tgtgctagaa ggttcgatgc ctctggaatg catgtgatac tcatctccat tttgtttcct 3301 tgattgcatt tttgttcttt tagcagatct gtccctgtgg gtggtgtcta agaagtcgga 3361 caccttggtt tttgtgttag attgagctgg gcagctgcaa tcagcttctt tatatgcaaa 3421 ttaggcacga cccatctgtg gttcctggtt ggtggctaat gaagtgaggg gagggaggga 3481 tgtcacccca aaagtaggcc ctcccattgg ctttggccag gccagacact tcacatcgtt 3541 tacatggttc tgtgtaattt taaagtttat gtgtataaag cgaagctgtt tctgtgaaac 3601 tgtatatttt gtaaataaat atattgctac tttgaggttc atgaaaaaaa aaaaaaaaaa 3661 aaaaaaagaa aaaaaaaaaa aaaa //