LOCUS BC038398 3400 bp mRNA linear HUM 08-DEC-2006 DEFINITION Homo sapiens chemokine (C-C motif) receptor 5, mRNA (cDNA clone MGC:34624 IMAGE:5186388), complete cds. ACCESSION BC038398 VERSION BC038398.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3400) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3400) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 50 Row: g Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4502638. FEATURES Location/Qualifiers source 1..3400 /db_xref="H-InvDB:HIT000052024" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34624 IMAGE:5186388" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3400 /gene="CCR5" /gene_synonym="CC-CKR-5" /gene_synonym="CCCKR5" /gene_synonym="CD195" /gene_synonym="CKR-5" /gene_synonym="CKR5" /db_xref="GeneID:1234" /db_xref="HGNC:HGNC:1606" /db_xref="MIM:601373" CDS 44..1102 /gene="CCR5" /gene_synonym="CC-CKR-5" /gene_synonym="CCCKR5" /gene_synonym="CD195" /gene_synonym="CKR-5" /gene_synonym="CKR5" /codon_start=1 /product="chemokine (C-C motif) receptor 5" /protein_id="AAH38398.1" /db_xref="GeneID:1234" /db_xref="HGNC:HGNC:1606" /db_xref="MIM:601373" /translation="MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFG FVGNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQ LLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFAS LPGIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGIL KTLLRCRNEKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLD QAMQVTETLGMTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPER ASSVYTRSTGEQEISVGL" BASE COUNT 985 a 682 c 827 g 906 t ORIGIN 1 gacatccgtt cccctacaag aaactctccc cgggtggaac aagatggatt atcaagtgtc 61 aagtccaatc tatgacatca attattatac atcggagccc tgccaaaaaa tcaatgtgaa 121 gcaaatcgca gcccgcctcc tgcctccgct ctactcactg gtgttcatct ttggttttgt 181 gggcaacatg ctggtcatcc tcatcctgat aaactgcaaa aggctgaaga gcatgactga 241 catctacctg ctcaacctgg ccatctctga cctgtttttc cttcttactg tccccttctg 301 ggctcactat gctgccgccc agtgggactt tggaaataca atgtgtcaac tcttgacagg 361 gctctatttt ataggcttct tctctggaat cttcttcatc atcctcctga caatcgatag 421 gtacctggct gtcgtccatg ctgtgtttgc tttaaaagcc aggacggtca cctttggggt 481 ggtgacaagt gtgatcactt gggtggtggc tgtgtttgcg tctctcccag gaatcatctt 541 taccagatct caaaaagaag gtcttcatta cacctgcagc tctcattttc catacagtca 601 gtatcaattc tggaagaatt tccagacatt aaagatagtc atcttggggc tggtcctgcc 661 gctgcttgtc atggtcatct gctactcggg aatcctaaaa actctgcttc ggtgtcgaaa 721 tgagaagaag aggcacaggg ctgtgaggct tatcttcacc atcatgattg tttattttct 781 cttctgggct ccctacaaca ttgtccttct cctgaacacc ttccaggaat tctttggcct 841 gaataattgc agtagctcta acaggttgga ccaagctatg caggtgacag agactcttgg 901 gatgacgcac tgctgcatca accccatcat ctatgccttt gtcggggaga agttcagaaa 961 ctacctctta gtcttcttcc aaaagcacat tgccaaacgc ttctgcaaat gctgttctat 1021 tttccagcaa gaggctcccg agcgagcaag ctcagtttac acccgatcca ctggggagca 1081 ggaaatatct gtgggcttgt gacacggact caagtgggct ggtgacccag tcagagttgt 1141 gcacatggct tagttttcat acacagcctg ggctgggggt ggggtgggag aggtcttttt 1201 taaaaggaag ttactgttat agagggtcta agattcatcc atttatttgg catctgttta 1261 aagtagatta gatcttttaa gcccatcaat tatagaaagc cagatcaaaa tatgttgatg 1321 aaaaatagca acctttttat ctccccttca catgcatcaa gttattgaca aactctccct 1381 tcactccgaa agttccttat gtatatttaa aagaaagcct cagagaattg ctgattcttg 1441 agtttagtga tctgaacaga aataccaaaa ttatttcaga aatgtacaac tttttaccta 1501 gtacaaggta acatataggt tgtaaatgtg tttaaaacag gtctttgtct tgctatgggg 1561 agaaaagaca tgaatatgat tagtaaagaa atgacacttt tcatgtgtga tttcccctcc 1621 aaggtatggt taataagttt cactgactta gaaccaggcg agagacttgt ggcctgggag 1681 agctggggaa gcttcttaaa tgagaaggaa tttgagttgg atcatctatt gctggcaaag 1741 acagaagcct cactgcaagc actgcatggg caagcttggc tgtagaagga gacagagctg 1801 gttgggaaga catggggagg aaggacaagg ctagatcatg aagaaccttg acggcattgc 1861 tccgtctaag tcatgagctg agcagggaga tcctggttgg tgttgcagaa ggtttactct 1921 gtggccaaag gagggtcagg aaggatgagc atttagggca aggagaccac caacagccct 1981 caggtcaggg tgaggatggc ctctgctaag ctcaaggcgt gaggatggga aggagggagg 2041 tattcgtaag gatgggaagg agggaggtat tcgtgcagca tatgaggatg cagagtcagc 2101 agaactgggg tggatttggg ttggaagtga gggtcagaga ggagtcagag agaatcccta 2161 gtcttcaagc agattggaga aacccttgaa aagacatcaa gcacagaagg aggaggagga 2221 ggtttaggtc aagaagaaga tggattggtg taaaaggatg ggtctggttt gcagagcttg 2281 aacacagtct cacccagact ccaggctgtc tttcactgaa tgcttctgac ttcatagatt 2341 tccttcccat cccagctgaa atactgaggg gtctccagga ggagactaga tttatgaata 2401 cacgaggtat gaggtctagg aacatacttc agctcacaca tgagatctag gtgaggattg 2461 attacctagt agtcatttca tgggttgttg ggaggattct atgaggcaac cacaggcagc 2521 atttagcaca tactacacat tcaataagca tcaaactctt agttactcat tcagggatag 2581 cactgagcaa agcattgagc aaaggggtcc catagaggtg agggaagcct gaaaaactaa 2641 gatgctgcct gcccagtgca cacaagtgta ggtatcattt tctgcattta accgtcaata 2701 ggcaaagggg ggaagggaca tattcatttg gaaataagct gccttgagcc ttaaaaccca 2761 caaaagtaca atttaccagc ctccgtattt cagactgaat gggggtgggg ggggcgcctt 2821 gggtacttat tccagatgcc ttctccagac aaaccagaag caacagaaag aatcgtctct 2881 ccctcccttt gaaatgaata taccccttag tgtttgggta tgttcatttc aaagggagag 2941 agagaggttt ttttctgttc tgtctcatat gattgtgcac atacttgaga ctgttttgaa 3001 tttgggggat ggctaaaacc atcatagtac aggtaaggtg agggaatagt aagtggtgag 3061 aactactcag ggaatgaagg tgtcagaata ataagaggtg ctactgactt tctcagcctc 3121 tgaatatgaa cggtgagcat tgtggctgtc agcaggaagc aacgaaggga aatgtctttc 3181 cttttgctct taagttgtgg agagtgcaac agtagcatag gaccctaccc tctgggccaa 3241 gtcaaagaca ttctgacatc ttagtatttg catattctta tgtatgtgaa agttacaaat 3301 tgcttgaaag aaaatatgca tctaataaaa aacaccttct aaaataaaaa aaaaaaaaaa 3361 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //