LOCUS BC038398 3400 bp mRNA linear HUM 08-DEC-2006
DEFINITION Homo sapiens chemokine (C-C motif) receptor 5, mRNA (cDNA clone
MGC:34624 IMAGE:5186388), complete cds.
ACCESSION BC038398
VERSION BC038398.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3400)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3400)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: g Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502638.
FEATURES Location/Qualifiers
source 1..3400
/db_xref="H-InvDB:HIT000052024"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34624 IMAGE:5186388"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3400
/gene="CCR5"
/gene_synonym="CC-CKR-5"
/gene_synonym="CCCKR5"
/gene_synonym="CD195"
/gene_synonym="CKR-5"
/gene_synonym="CKR5"
/db_xref="GeneID:1234"
/db_xref="HGNC:HGNC:1606"
/db_xref="MIM:601373"
CDS 44..1102
/gene="CCR5"
/gene_synonym="CC-CKR-5"
/gene_synonym="CCCKR5"
/gene_synonym="CD195"
/gene_synonym="CKR-5"
/gene_synonym="CKR5"
/codon_start=1
/product="chemokine (C-C motif) receptor 5"
/protein_id="AAH38398.1"
/db_xref="GeneID:1234"
/db_xref="HGNC:HGNC:1606"
/db_xref="MIM:601373"
/translation="MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFG
FVGNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQ
LLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFAS
LPGIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGIL
KTLLRCRNEKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLD
QAMQVTETLGMTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPER
ASSVYTRSTGEQEISVGL"
BASE COUNT 985 a 682 c 827 g 906 t
ORIGIN
1 gacatccgtt cccctacaag aaactctccc cgggtggaac aagatggatt atcaagtgtc
61 aagtccaatc tatgacatca attattatac atcggagccc tgccaaaaaa tcaatgtgaa
121 gcaaatcgca gcccgcctcc tgcctccgct ctactcactg gtgttcatct ttggttttgt
181 gggcaacatg ctggtcatcc tcatcctgat aaactgcaaa aggctgaaga gcatgactga
241 catctacctg ctcaacctgg ccatctctga cctgtttttc cttcttactg tccccttctg
301 ggctcactat gctgccgccc agtgggactt tggaaataca atgtgtcaac tcttgacagg
361 gctctatttt ataggcttct tctctggaat cttcttcatc atcctcctga caatcgatag
421 gtacctggct gtcgtccatg ctgtgtttgc tttaaaagcc aggacggtca cctttggggt
481 ggtgacaagt gtgatcactt gggtggtggc tgtgtttgcg tctctcccag gaatcatctt
541 taccagatct caaaaagaag gtcttcatta cacctgcagc tctcattttc catacagtca
601 gtatcaattc tggaagaatt tccagacatt aaagatagtc atcttggggc tggtcctgcc
661 gctgcttgtc atggtcatct gctactcggg aatcctaaaa actctgcttc ggtgtcgaaa
721 tgagaagaag aggcacaggg ctgtgaggct tatcttcacc atcatgattg tttattttct
781 cttctgggct ccctacaaca ttgtccttct cctgaacacc ttccaggaat tctttggcct
841 gaataattgc agtagctcta acaggttgga ccaagctatg caggtgacag agactcttgg
901 gatgacgcac tgctgcatca accccatcat ctatgccttt gtcggggaga agttcagaaa
961 ctacctctta gtcttcttcc aaaagcacat tgccaaacgc ttctgcaaat gctgttctat
1021 tttccagcaa gaggctcccg agcgagcaag ctcagtttac acccgatcca ctggggagca
1081 ggaaatatct gtgggcttgt gacacggact caagtgggct ggtgacccag tcagagttgt
1141 gcacatggct tagttttcat acacagcctg ggctgggggt ggggtgggag aggtcttttt
1201 taaaaggaag ttactgttat agagggtcta agattcatcc atttatttgg catctgttta
1261 aagtagatta gatcttttaa gcccatcaat tatagaaagc cagatcaaaa tatgttgatg
1321 aaaaatagca acctttttat ctccccttca catgcatcaa gttattgaca aactctccct
1381 tcactccgaa agttccttat gtatatttaa aagaaagcct cagagaattg ctgattcttg
1441 agtttagtga tctgaacaga aataccaaaa ttatttcaga aatgtacaac tttttaccta
1501 gtacaaggta acatataggt tgtaaatgtg tttaaaacag gtctttgtct tgctatgggg
1561 agaaaagaca tgaatatgat tagtaaagaa atgacacttt tcatgtgtga tttcccctcc
1621 aaggtatggt taataagttt cactgactta gaaccaggcg agagacttgt ggcctgggag
1681 agctggggaa gcttcttaaa tgagaaggaa tttgagttgg atcatctatt gctggcaaag
1741 acagaagcct cactgcaagc actgcatggg caagcttggc tgtagaagga gacagagctg
1801 gttgggaaga catggggagg aaggacaagg ctagatcatg aagaaccttg acggcattgc
1861 tccgtctaag tcatgagctg agcagggaga tcctggttgg tgttgcagaa ggtttactct
1921 gtggccaaag gagggtcagg aaggatgagc atttagggca aggagaccac caacagccct
1981 caggtcaggg tgaggatggc ctctgctaag ctcaaggcgt gaggatggga aggagggagg
2041 tattcgtaag gatgggaagg agggaggtat tcgtgcagca tatgaggatg cagagtcagc
2101 agaactgggg tggatttggg ttggaagtga gggtcagaga ggagtcagag agaatcccta
2161 gtcttcaagc agattggaga aacccttgaa aagacatcaa gcacagaagg aggaggagga
2221 ggtttaggtc aagaagaaga tggattggtg taaaaggatg ggtctggttt gcagagcttg
2281 aacacagtct cacccagact ccaggctgtc tttcactgaa tgcttctgac ttcatagatt
2341 tccttcccat cccagctgaa atactgaggg gtctccagga ggagactaga tttatgaata
2401 cacgaggtat gaggtctagg aacatacttc agctcacaca tgagatctag gtgaggattg
2461 attacctagt agtcatttca tgggttgttg ggaggattct atgaggcaac cacaggcagc
2521 atttagcaca tactacacat tcaataagca tcaaactctt agttactcat tcagggatag
2581 cactgagcaa agcattgagc aaaggggtcc catagaggtg agggaagcct gaaaaactaa
2641 gatgctgcct gcccagtgca cacaagtgta ggtatcattt tctgcattta accgtcaata
2701 ggcaaagggg ggaagggaca tattcatttg gaaataagct gccttgagcc ttaaaaccca
2761 caaaagtaca atttaccagc ctccgtattt cagactgaat gggggtgggg ggggcgcctt
2821 gggtacttat tccagatgcc ttctccagac aaaccagaag caacagaaag aatcgtctct
2881 ccctcccttt gaaatgaata taccccttag tgtttgggta tgttcatttc aaagggagag
2941 agagaggttt ttttctgttc tgtctcatat gattgtgcac atacttgaga ctgttttgaa
3001 tttgggggat ggctaaaacc atcatagtac aggtaaggtg agggaatagt aagtggtgag
3061 aactactcag ggaatgaagg tgtcagaata ataagaggtg ctactgactt tctcagcctc
3121 tgaatatgaa cggtgagcat tgtggctgtc agcaggaagc aacgaaggga aatgtctttc
3181 cttttgctct taagttgtgg agagtgcaac agtagcatag gaccctaccc tctgggccaa
3241 gtcaaagaca ttctgacatc ttagtatttg catattctta tgtatgtgaa agttacaaat
3301 tgcttgaaag aaaatatgca tctaataaaa aacaccttct aaaataaaaa aaaaaaaaaa
3361 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//