LOCUS BC038229 4222 bp mRNA linear HUM 18-AUG-2006 DEFINITION Homo sapiens patatin-like phospholipase domain containing 6, mRNA (cDNA clone IMAGE:4509888), partial cds. ACCESSION BC038229 VERSION BC038229.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4222) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4222) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-SEP-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 68 Row: f Column: 12. FEATURES Location/Qualifiers source 1..4222 /db_xref="H-InvDB:HIT000095146" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4509888" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..4222 /gene="PNPLA6" /gene_synonym="NTE" /gene_synonym="sws" /db_xref="GeneID:10908" /db_xref="HGNC:HGNC:16268" /db_xref="MIM:603197" CDS <1..4001 /gene="PNPLA6" /gene_synonym="NTE" /gene_synonym="sws" /codon_start=3 /product="PNPLA6 protein" /protein_id="AAH38229.1" /db_xref="GeneID:10908" /db_xref="HGNC:HGNC:16268" /db_xref="MIM:603197" /translation="TRPVCGAQPVPFVPQVLGVMIGAGVAVVVTAVLILLVVRRLRVP KTPAPDGPRYRFRKRDKVLFYGRKIMRKVSQSTSSLVDTSVSATSRPRMRKKLKMLNI AKKILRIQKETPTLQRKEPPPAVLEADLTEGDLANSHLPSEVLYMLKNVRVLGHFEKP LFLELCRHMVFQRLGQGDYVFRPGQPDASIYVVQDGLLELCLPGPDGKECVVKEVVPG DSVNSLLSILDVITGHQHPQRTVSARAARDSTVLRLPVEAFSAVFTKYPESLVRVVQI IMVRLQRVTFLALHNYLGLTNELFSHEIQPLRLFPSPGLPTRTSPVRGSKRMVSTSAT DEPRETPGRPPDPTGAPLPGPTGDPVKPTSLETPSPPLLSRCVSMPGDISGLQGGPRS DFDMAYERGRISVSLQEEASGGSLAAPARTPTQEPREQPAGACEYSYCEDESATGGCP FGPYQGRQTSSIFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGDQDVSLH FVLWGCLHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRIS KSDFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALYRQGDRSDCT YIVLNGRLRSVIQRGSGKKELVGEYGRGDLIGVVEALTRQPRATTVHTVRDTELAKLP EGTLGHIKRRYPQVVTRLIHLLSQKILGNLQQLQGPFPGSGLGVPPHSELTNPASNLA TVAILPVCAEVPMVAFTLELQHALQAIGPTLLLNSDIIRARLGASALDSIQEFRLSGW LAQQEDAHRIVLYQTDASLTPWTVRCLRQADCILIVGLGDQEPTLGQLEQMLENTAVR ALKQLVLLHREEGAGPTRTVEWLNMRSWCSGHLHLRCPRRLFSRRSPAKLHELYEKVF SRRADRHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSI GSFIGALYAEERSASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTGSAFNRSIHRV FQDKQIEDLWLPYFNVTTDITASAMRVHKDGSLWRYVRASMTLSGYLPPLCDPKDGHL LMDGGYINNLPADIARSMGAKTVIAIDVGSQDETDLSTYGDSLSGWWLLWKRLNPWAD KVKVPDMAEIQSRLAYVSCVRQLEVVKSSSYCEYLRPPIDCFKTMDFGKFDQIYDVGY QYGKAVFGGWSRGNVIEKMLTDRRSTDLNESRRADVLAFPSSGFTDLAEIVSRIEPPT SYVSDGCADGEESDCLTEYEEDAGPDCSRDEGGSPEGASPSTASEMEEEKSILRQRRC LPQEPPGSATDA" BASE COUNT 792 a 1366 c 1317 g 747 t ORIGIN 1 ccacgcgtcc ggtttgcggt gcgcagccag tgccgttcgt ccctcaggtg cttggcgtga 61 tgatcggggc cggagtggcg gtggtggtca cggccgtgct catcctcctg gtggtgcgga 121 ggctgcgagt gccaaaaacc ccagccccgg atggcccccg gtatcggttc cggaagaggg 181 acaaagtgct cttctatggc cggaagatta tgcggaaggt gtcacaatcc acctcctccc 241 tcgtggatac ctctgtctcc gccacctccc ggccacgcat gaggaagaaa ctgaagatgc 301 tcaacattgc caagaagatc ctgcgcatcc agaaagagac gcccacgctg cagcggaagg 361 agcccccgcc cgcagtgcta gaagctgacc tgaccgaggg cgacctggct aactcccatc 421 tgccctctga agtgctttat atgctcaaga acgtccgggt gctgggccac ttcgagaagc 481 cactcttcct ggagctctgc cgccacatgg tcttccagcg gctgggccag ggtgactacg 541 tcttccggcc gggccagcca gatgccagca tctacgtggt gcaggacggg ctgctggagc 601 tctgtctgcc agggcctgac gggaaggagt gtgtggtgaa ggaagtggtt cctggggaca 661 gcgtcaacag ccttctcagc atcctggatg tcatcaccgg tcaccagcat ccccagcgga 721 ccgtgtctgc ccgggcggcc cgggactcca cagtgctgcg cctgccggtg gaagcattct 781 ccgcggtctt caccaagtac ccggagagct tggtgcgggt cgtgcagatc atcatggtgc 841 ggctgcagcg agtcaccttc ctggcactgc acaactacct gggtctgacc aatgagctct 901 tcagccacga gatccagccc ctgcgtctgt tccccagccc cggcctccca actcgcacca 961 gccctgtgcg gggctccaag agaatggtca gcacctcagc tacagacgag cccagggaga 1021 ccccagggcg gccacccgat cccaccgggg ccccgctgcc tggacctaca ggggaccctg 1081 tgaagcccac atccctggaa accccctcgc cccctctgct gagccgctgc gtctccatgc 1141 caggggacat ctcaggcttg cagggtggcc cccgctccga cttcgacatg gcctatgagc 1201 gtggccggat ctccgtgtcc ctgcaggaag aggcctccgg ggggtccctg gcagcccccg 1261 ctcggacccc cactcaggag cctcgtgagc agccggcagg cgcctgtgaa tacagctact 1321 gtgaggatga gtcggccact ggtggctgcc ctttcgggcc ctaccagggc cgccagacca 1381 gcagcatctt cgaggcagca aagcaggagc tggccaagct gatgcggatt gaggacccct 1441 ccctcctgaa cagcagagtc ttgctgcacc acgccaaagc tggcaccatc attgcccgcc 1501 agggagacca ggacgtgagc ctgcacttcg tgctctgggg ctgcctgcac gtgtaccagc 1561 gcatgatcga caaggcggag gacgtgtgcc tgttcgtagc gcagcccggg gaactggtgg 1621 ggcagctggc ggtgctcact ggcgaacctc tcatcttcac actgcgagcc caacgcgact 1681 gcaccttcct gcggatctcc aagtccgact tctatgagat catgcgcgca cagcccagtg 1741 tggtgctgag tgcggcgcac acggtggcag ccaggatgtc gcccttcgtg cgccagatgg 1801 acttcgccat cgactggact gcagtggagg cgggacgcgc gctgtacagg cagggcgacc 1861 gctccgactg cacttacatc gtgctcaatg ggcggctgcg tagcgtgatc cagcgaggca 1921 gtggcaagaa ggagctggtg ggcgagtacg gccgcggcga cctcatcggc gtggtggagg 1981 cactgacccg gcagccacga gccacgacgg tgcacacggt gcgcgacacg gagctggcca 2041 agcttcccga gggcaccttg ggtcacatca aacgccggta cccgcaggtc gtgacccgcc 2101 ttatccacct actgagccag aaaattctag ggaatttgca gcagctgcaa ggacccttcc 2161 caggctctgg gttgggtgtg cccccacact cggaactcac caacccagcc agcaacctgg 2221 caactgtggc aatcctgcct gtgtgtgctg aggtccccat ggtggccttc acgctggagc 2281 tgcagcacgc cctgcaggcc atcggtccga cgctactcct taacagtgac atcatccggg 2341 cacgcctggg ggcctccgca ctggatagca tccaagagtt ccggctgtca gggtggctgg 2401 cccagcagga ggatgcacac cgtatcgtac tctaccagac ggacgcctcg ctgacgccct 2461 ggaccgtgcg ctgcctgcga caggccgact gcatcctcat tgtgggcctg ggggaccagg 2521 agcctaccct cggccagctg gagcagatgc tggagaacac ggctgtgcgc gcccttaagc 2581 agctagtcct gctccaccga gaggagggcg cgggccccac gcgcaccgtg gagtggctaa 2641 atatgcgcag ctggtgctcg gggcacctgc acctgcgctg tccgcgccgc ctcttttcgc 2701 gccgcagccc tgccaagctg catgagctct acgagaaggt tttctccagg cgcgcggacc 2761 ggcacagcga cttctcccgc ttggcgaggg tgctcacggg gaacaccatt gcccttgtgc 2821 taggcggggg cggggccagg ggctgctcgc acatcggagt actaaaggca ttagaggagg 2881 cgggggtccc cgtggacctg gtgggcggca cgtccattgg ctctttcatc ggagcgttgt 2941 acgcggagga gcgcagcgcc agccgcacga agcagcgggc ccgggagtgg gccaagagca 3001 tgacttcggt gctggaacct gtgttggacc tcacgtaccc agtcacctcc atgttcactg 3061 ggtctgcctt taaccgcagc atccatcggg tcttccagga taagcagatt gaggacctgt 3121 ggctgcctta cttcaacgtg accacagata tcaccgcctc agccatgcga gtccacaaag 3181 atggctccct gtggcggtac gtgcgcgcca gcatgacgct gtcgggctac ctgcccccgc 3241 tgtgcgaccc caaggacggg cacctactca tggatggcgg ctacatcaac aatctgccag 3301 cggacatcgc ccgcagcatg ggtgccaaaa cggtcatcgc cattgacgtg gggagccagg 3361 atgagacgga cctcagcacc tacggggaca gcctgtccgg ctggtggctg ctgtggaagc 3421 ggctgaatcc ctgggctgac aaggtaaagg ttccagacat ggctgaaatc cagtcccgcc 3481 tggcctacgt gtcctgtgtg cggcagctag aggttgtcaa gtccagctcc tactgcgagt 3541 acctgcgccc gcccatcgac tgcttcaaga ccatggactt tgggaagttc gaccagatct 3601 atgatgtggg ctaccagtac gggaaggcgg tgtttggagg ctggagccgt ggcaacgtca 3661 ttgagaaaat gctcacagac cggcggtcta cagaccttaa tgagagccgc cgtgcagacg 3721 tgcttgcctt cccaagctct ggcttcactg acttggcaga gattgtgtcc cggattgagc 3781 cccccacgag ctatgtctct gatggctgtg ctgacggaga ggagtcagat tgtctgacag 3841 agtatgagga ggacgccgga cccgactgct cgagggatga aggggggtcc cccgagggcg 3901 caagccccag cactgcctcc gagatggagg aggagaagtc gattctccgg caacgacgct 3961 gtctgcccca ggagccgccc ggctcagcca cagatgcctg aggacctcga caggggtcac 4021 cccctccctc ccacccctgg actgggctgg gggtggcccc gtgggggtag ctcactcccc 4081 ctcctgctgc tatgcctgtg acccccgcgg cccacacact ggactgacct gccctgagcg 4141 gggatgcagt gttgcactga tgacttgacc agcccctccc ccaataaact cgcctcttgg 4201 aaaaaaaaaa aaaaaaaaaa aa //