LOCUS BC038115 6031 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 60, mRNA (cDNA
clone MGC:43125 IMAGE:5261001), complete cds.
ACCESSION BC038115
VERSION BC038115.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6031)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6031)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC038115.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: d Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059778.
FEATURES Location/Qualifiers
source 1..6031
/db_xref="H-InvDB:HIT000051997"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43125 IMAGE:5261001"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..6031
/gene="DDX60"
/db_xref="GeneID:55601"
/db_xref="HGNC:HGNC:25942"
CDS 238..5376
/gene="DDX60"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
/protein_id="AAH38115.1"
/db_xref="GeneID:55601"
/db_xref="HGNC:HGNC:25942"
/translation="MERNVLTTFSQEMSQLILNEMPKAEYSSLFNDFVESEFFLIDGD
SLLITCICEISFKPGQNLHFFYLVERYLVDLISKGGQFTIVFFKDAEYAYFNFPELLS
LRTALILHLQKNTTIDVRTTFSRCLSKEWGSFLEESYPYFLIVADEGLNDLQTQLFNF
LIIHSWARKVNVVLSSGQESDVLCLYAYLLPSMYRHQIFSWKNKQNIKDAYTTLLNQL
ERFKLSALAPLFGSLKWNNITEEAHKTVSLLTQVWPEGSDIRRVFCVTSCSLSLRMYH
RFLGNREPSSGQETEIQQVNSNCLTLQEMEDLCKLHCLTVVFLLHLPLSQRACARVIT
SHWAEDMKPLLQMKKWCEYFILRNIHTFEFWNLNLIHLSDLNDELLLKNIAFYYENEN
VKGLHLNLGDTIMKDYEYLWNTVSKLVRDFEVGQPFPLRTTKVCFLGKKPSPIKDSSN
EMVPNLGFIPTSSFVVDKFAGDILKDLPFLKSDDPIVTSLVKQKEFDELVHWHSHKPL
SDDYDRSRCQFDEKSRDPRVLRSVQKYHVFQRFYGNSLETVSSKIIVTQTIKSKKDFS
GPKSKKAHETKAEIIARENKKRLFAREEQKEEQKWNALSFSIEEQLKENLHSGIKSLE
DFLKSCKSSCVKLQVEMVGLTACLKAWKEHCRSEEGKTTKDLSIAVQVMKRIHSLMEK
YSELLQEDDRQLIARCLKYLGFDELASSLHPAQDAENDVKVKKRNKYSIGIGPARFQL
QYMGHYLIRDERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYC
MEKVLKESDDGVVVYVAPTKALVNQVAATVQNRFTKNLPSGEVLCGVFTREYRHDALN
CQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCPF
LALSATISNPEHLTEWLQSVKWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQVKQSY
KVRLVLYGERYNDLEKHVCSIKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPRES
IQLYDAMFQIWKSWPRAQELCPENFIHFNNKLVIKKMDARKYEESLKAELTSWIKNGN
VEQARMVLQNLSPEADLSPENMITMFPLLVEKLRKMEKLPALFFLFKLGAVENAAESV
STFLKKKQETKRPPKADKEAHVMANKLRKVKKSIEKQKIIDEKSQKKTRNVDQSLIHE
AEHDNLVKCLEKNLEIPQDCTYADQKAVDTETLQKVFGRVKFERKGEELKALAERGIG
YHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNYR
QMSGRAGRRGQDLMGDVYFFDIPFPKIGKLIKSNVPELRGHFPLSITLVLRLMLLASK
GDDPEDTKAKVLSVLKHSLLSFKQPRVMDMLKLYFLFSLQFLVKEGYLDQEGNPMGFA
GLVSHLHYHEPSNLVFVSFLVNGLFHDLCQPTRKGSKHFSQDVMEKLVLVLAHLFGRR
YFPPKFQDAHFEFYQSKVFLDDLPEDFSDALDEYNMKIMEDFTTFLRIVSKLADMNQE
YQLPLSKIKFTGKECEDSQLVSHLMSCKEGRVAISPFVCLSGNFDDDLLRLETPNHVT
LGTIGVNRSQAPVLLSQKFDNRGRKMSLNAYALDFYKHGSLIGLVQDNRMNEGDAYYL
LKDFALTIKSISVSLRELCENEDDNVVLAFEQLSTTFWEKLNKV"
BASE COUNT 1926 a 1083 c 1251 g 1771 t
ORIGIN
1 gctgggtcct aggccaggtc tggggtaacc tggaacttcc acctgggctc tgcgctaggt
61 ctctgtttca ctccctcccc gcggggcgcg cagctcgcgg gtctttggac accaccggtc
121 ctgagtccgc ggactgccat tttcattaag aactgccact tagaggtacc aaaataaagg
181 gtatttgcta cctttaatac ttgccagttc aggttggagg cacaggcagc agcaagaatg
241 gaaagaaatg ttcttacaac attttcacag gaaatgtccc agttaatttt gaatgaaatg
301 ccaaaagctg aatattccag tttattcaat gattttgttg aatctgaatt ttttttgatt
361 gatggggatt cattacttat cacatgtatc tgtgagatat catttaagcc tgggcagaac
421 ctccatttct tctatctggt tgaacgctat cttgtggatc ttattagcaa aggaggacaa
481 ttcaccatag ttttcttcaa ggatgccgag tatgcgtatt tcaacttccc tgaacttctt
541 tctttgagaa ctgctttaat tcttcatctt cagaagaata ccaccattga tgttcgaaca
601 acattttcga gatgcttatc aaaagagtgg ggaagtttct tggaagagag ttacccatat
661 ttcctgatag ttgcagacga aggcctgaac gatctacaaa cacagctttt caacttttta
721 atcattcatt cttgggcaag gaaggtcaac gttgtacttt cctcagggca agaatctgat
781 gttctttgcc tttatgcata ccttcttcca agcatgtaca gacaccagat tttttcctgg
841 aagaataagc agaacattaa agatgcttat acaaccctgc ttaaccagtt ggaaagattt
901 aagctttcag cattagcacc tctttttgga agtttaaaat ggaataatat tacggaagag
961 gcacacaaga ctgtatctct gcttacacaa gtctggccag aaggatctga cattcggcgt
1021 gtcttttgtg ttacttcatg ctcattatct ttgagaatgt accatcgctt tttaggaaac
1081 agagagccct cctctggtca ggaaactgag atccaacagg tgaacagtaa ttgcttaacc
1141 ctgcaggaga tggaagattt gtgtaaactg cattgtctca ctgtggtttt tctactccat
1201 ctgcctcttt ctcaaagagc ttgtgctaga gtcatcactt cacattgggc tgaggacatg
1261 aagcctttat tacaaatgaa aaagtggtgt gaatatttca tcttaagaaa tatacatact
1321 tttgaatttt ggaatctgaa tttaattcac ctttctgact taaatgatga gcttttgttg
1381 aagaatattg ctttttacta tgaaaatgaa aatgtaaaag gcctacattt gaatttggga
1441 gataccatta tgaaagatta tgaatatctc tggaataccg tatcaaagtt ggtcagagac
1501 tttgaggttg gacagccatt tcctctgaga acaacaaaag tttgttttct tggaaagaaa
1561 ccatcaccaa tcaaagacag ctccaatgaa atggtgccca atttgggttt tattccaacg
1621 tcatcttttg tggttgataa atttgctgga gatattttga aagatttgcc ttttctaaag
1681 agtgatgatc ctattgttac ttcactggtt aaacaaaagg aatttgatga acttgtgcac
1741 tggcattctc ataaacccct gagtgatgat tatgacaggt ccaggtgtca gtttgatgaa
1801 aaatctagag accctcgtgt tcttagatct gtgcaaaagt atcatgtttt ccaacggttt
1861 tatgggaatt cattagaaac agtctcttcg aaaatcatcg tgactcaaac tattaagtca
1921 aagaaggatt ttagtgggcc caagagcaaa aaggcacacg agaccaaggc tgaaataatt
1981 gctagagaga ataagaaaag gttatttgcc agggaagaac aaaaggaaga gcaaaagtgg
2041 aatgctttgt cattttctat tgaagagcaa ttgaaagaaa atttacactc tggaataaag
2101 agcctggaag attttttgaa atcctgtaaa agtagctgtg tgaaacttca ggttgaaatg
2161 gtggggttaa ctgcttgctt gaaagcctgg aaagaacatt gccgaagtga agaaggtaaa
2221 accacgaaag atttaagtat agctgttcag gtgatgaaaa ggatccactc cttgatggaa
2281 aaatactcag aacttttaca agaagatgat cggcaactca tagccagatg ccttaagtat
2341 ttaggatttg atgagttggc aagttcttta catccagccc aggatgcaga aaatgatgta
2401 aaagtgaaga aaaggaataa atattcaatt ggcattgggc cagctcggtt ccaactgcaa
2461 tacatgggcc attatttgat acgagatgag agaaaagacc cagatcccag ggtccaggat
2521 tttattcccg acacatggca gcgagagctc cttgatgttg tggataagaa tgagtcagca
2581 gtgattgttg ccccaacgtc ctcaggcaaa acatatgcct cctactactg tatggagaaa
2641 gtgctgaagg agagcgacga cggggtggtc gtgtacgttg cacccacaaa ggcccttgtt
2701 aatcaagtgg cagcaactgt tcagaatcgt tttacgaaaa atctgccaag tggtgaagtt
2761 ctctgtggtg ttttcaccag ggagtatcgt catgatgcct taaactgtca ggtacttatt
2821 acagtgcctg cctgctttga aattctgctg cttgctcctc atcgccaaaa ctgggtgaaa
2881 aagatcagat atgttatatt tgatgaggtt cattgtcttg gtggagaaat tggagcagaa
2941 atctgggaac atctccttgt catgatccga tgtccctttt tggctctttc agctaccata
3001 agtaatcctg aacatctcac cgagtggcta caatcggtaa aatggtactg gaaacaagaa
3061 gacaaaataa ttgaaaataa taccgcttct aaaagacatg tgggtcgtca ggccggcttt
3121 cccaaagact acttgcaagt aaaacaatcg tataaagtta gacttgtgct ctatggagag
3181 aggtataatg atctagagaa gcatgtatgt tcaataaaac atggtgacat tcattttgat
3241 cattttcacc catgtgctgc actaacaaca gatcatattg aaaggtatgg attccctcct
3301 gatcttaccc tttcacctcg agaaagcatc cagctgtatg atgccatgtt tcaaatttgg
3361 aaaagttggc ctcgggccca ggaactgtgc ccagaaaact tcattcattt taacaataaa
3421 ttagtcatta aaaagatgga tgctaggaaa tatgaagaga gtctaaaggc agaattaaca
3481 agttggatta aaaatggcaa cgtagagcag gccagaatgg tacttcagaa tcttagtcct
3541 gaagcagatt tgagtccaga aaacatgatc accatgtttc cacttctagt tgaaaaacta
3601 aggaaaatgg agaagttacc tgcactattt tttttattca agttaggagc tgtagaaaac
3661 gcagctgaaa gtgtgagcac tttcctaaag aaaaagcagg agacaaaaag gcctcccaaa
3721 gctgataaag aagcccatgt catggctaac aaacttcgaa aagttaaaaa atccatagag
3781 aaacaaaaga tcatagatga aaagagccag aaaaaaacca gaaatgtgga tcaaagccta
3841 atacatgaag ctgaacatga taatctagtg aagtgtctag agaagaacct ggaaatccca
3901 caggactgca catatgctga tcaaaaagca gtggacactg agactttgca gaaggtattt
3961 ggtcgagtaa aatttgaaag aaaaggtgaa gaattgaaag ccttggcaga aaggggtatt
4021 ggatatcatc acagtgctat gagtttcaaa gaaaaacaat tagttgaaat cctctttaga
4081 aaaggatatc ttagggtggt gacagctact ggaacacttg ctttaggtgt caacatgcct
4141 tgtaaatctg tggtttttgc tcaaaactca gtctatctgg atgcgttgaa ttatagacag
4201 atgtctggcc gtgctggaag aagaggtcaa gacctgatgg gagatgtata tttctttgat
4261 attccattcc ccaaaatagg aaaactcata aaatccaatg ttcctgagct gagaggacac
4321 ttccctctca gcataaccct ggtcctgcga ctcatgctgc tggcttccaa gggagatgac
4381 ccagaggata ccaaggcaaa ggtgctatca gtgctaaagc attcattgct gtccttcaag
4441 caacccagag tcatggacat gttaaaactt tacttcctgt tttctttgca gttcctggtg
4501 aaagagggct atttagatca agaaggtaat cctatggggt ttgctggact tgtatcacat
4561 ttgcattatc atgaaccttc taatcttgtt tttgtcagtt ttcttgtaaa tggactcttc
4621 catgatctct gtcagccaac caggaaaggc tcaaaacatt tttctcaaga cgttatggaa
4681 aagctagtat tagtattggc acatctcttt ggaagaagat attttccacc aaagttccaa
4741 gatgcacact tcgagtttta tcaatcaaag gtgttccttg atgatctccc tgaggatttt
4801 agtgatgctt tagatgaata taacatgaaa attatggagg actttaccac tttcctacga
4861 attgtttcca aactggctga tatgaatcag gaatatcaac tcccattgtc aaaaatcaaa
4921 ttcacaggta aagaatgtga agactctcaa ctcgtatctc atttgatgag ctgcaaggaa
4981 ggaagagtag caatttcacc atttgtttgt ctgtctggga actttgatga tgatttgctt
5041 cgactagaaa ctccaaacca tgttactcta ggcacaatcg gtgtcaatcg ctctcaggct
5101 ccagtgctgt tgtcacagaa atttgataac cgaggaagga aaatgtcgct taatgcctat
5161 gcactggatt tctacaaaca tggttccttg ataggattag tccaggataa caggatgaat
5221 gaaggagatg cttattattt gttgaaggat tttgcactca ccattaaatc tatcagtgtt
5281 tccttgcgtg agctatgtga aaatgaagac gacaacgttg tcttagcctt tgaacaactg
5341 agtacaactt tttgggaaaa gttaaacaaa gtctaaaaac aaagtctatg caaaccactt
5401 aaaaataatt ccatagtagt ttttcaggtc acgtttttga ttcttatgct tcttgccaga
5461 aatacattat gataaagtgg aaatacatta cgatgaagtg gaaagagcaa acactttgga
5521 atcaaacaga gttgcaatca aacctgcaat gttctgtcat gaatactcac aaattattta
5581 gtatacctga atcttggttt ctttttataa ctgagtaata atggttacat ctcaggtagt
5641 ttgaggattg actaaaaaaa tgcgagaatg ttgtatgtga ctgaataaca atttttactc
5701 tgcgaagcca aagtaaatat aatattatca gtaactttat ccccagtgtc agtatttata
5761 aaatgtttat taaggctaga aaaaatgaat acaatatcct gaaggtgaaa tatattctct
5821 tcaattagca taaatatgat ttacataagt tagctataca gctattgaga tagtactttc
5881 tagtaaactt aaactacttt ttaaacatac attttgtgat gatttaacaa aaatatagag
5941 aatgatttgc tttattgtaa ttgtatataa gtgactggaa aagcacaaag aaataaagtg
6001 ggttcgatct gttaaataaa aaaaaaaaaa a
//