LOCUS BC038106 2633 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens UBX domain protein 11, mRNA (cDNA clone MGC:33232
IMAGE:5269682), complete cds.
ACCESSION BC038106
VERSION BC038106.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2633)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2633)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281730
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2633
/db_xref="H-InvDB:HIT000051992"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33232 IMAGE:5269682"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2633
/gene="UBXN11"
/gene_synonym="COA-1"
/gene_synonym="PP2243"
/gene_synonym="SOC"
/gene_synonym="SOCI"
/db_xref="GeneID:91544"
/db_xref="HGNC:HGNC:30600"
/db_xref="MIM:609151"
CDS 86..1060
/gene="UBXN11"
/gene_synonym="COA-1"
/gene_synonym="PP2243"
/gene_synonym="SOC"
/gene_synonym="SOCI"
/codon_start=1
/product="UBXN11 protein"
/protein_id="AAH38106.1"
/db_xref="GeneID:91544"
/db_xref="HGNC:HGNC:30600"
/db_xref="MIM:609151"
/translation="MSSPLASLSKTRKVPLPSEPMNPGRRGIRIYGDEDEVDMLSDGC
GSEEKISVPSCYGGIGAPVSRQVPASHDSELMAFMTRKLWDLEQQVKAQTDEILSKDQ
KIAALEDLVQTLRPHPAEATLQRQEELETMCVQLQRQVREMERFLSDYGLQWVGEPMD
QEDSESKTVSEHGERDWMTAKKFWKPGDSLAPPEVDFDRLLASLQDLSELVVEGDTQV
TPVPGGARLRTLEPIPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRL
YPNGVPFKVISCSSNHTFGDFEGSGDTQPPQTPPILRGSRCTPWGTPV"
BASE COUNT 564 a 747 c 835 g 487 t
ORIGIN
1 agcgggacaa caagatggcg gcgctgcggg acggctagcg gccctgcgtg ggagttcctg
61 acagctggat tctagaagta gaactatgag ctcacctttg gcctccctta gcaagacccg
121 aaaagtgccc ctgccctcgg agcctatgaa tcctgggagg cgaggaatcc gcatctatgg
181 agatgaagat gaggtggaca tgttgagtga tgggtgtggc tcggaagaaa agatctcagt
241 cccttcctgc tatggcggca taggtgcccc tgtgagtcgg caagtccctg catcccatga
301 ctcggagctg atggccttca tgacgaggaa gttgtgggac ctggagcagc aggtgaaggc
361 ccagactgat gagatactgt ccaaggatca gaagatagcg gccctagagg acctggtgca
421 gaccctccgg ccacacccag ccgaggcaac cctgcagcgg caggaggaac tggagacgat
481 gtgtgtgcag ctgcagcggc aggtcaggga gatggagcgg ttcctcagtg actatggcct
541 gcagtgggtg ggcgagccca tggaccagga ggactcagag agcaagacag tctcagagca
601 tggcgagagg gactggatga cagccaagaa gttctggaag ccaggggact cattggcgcc
661 ccctgaggtg gactttgaca ggctgctggc cagcctgcag gatcttagtg agctggtggt
721 agagggtgac acccaagtga caccagtgcc cggcggggca cggctgcgta ccctcgagcc
781 catcccgctg aagctctacc ggaatggcat catgatgttc gacgggccct tccagccctt
841 ctacgatccc tccacacagc gctgcctccg agacatattg gatggcttct ttccctcaga
901 gctccagcga ctgtacccca atggggtccc ctttaaggtg ataagctgct cctcaaacca
961 cacctttggg gattttgaag ggagtgggga tacacagcct ccccagacac ctcccattct
1021 gaggggaagc cgctgcactc cctgggggac cccagtctga tgccctccag gaggataagt
1081 ctgaagccgg gctgggaagg gagcggagag gcccgaaaca gagcagcagg cagcgccctc
1141 tgctggcacc ctggagacag cctcggctgc ggggcccctg ccttctagtc ctccccagct
1201 ttcaggacac cttgacaacc tggggtccct gcagaagtgg cccggctgtc ccccaagtct
1261 cctgaagcta tctgggtagg gtgggaggca gtgctgtgag ccacaaatgc aaagcagagg
1321 ggacagatgt tgggactcaa agacatgagg tagagctggc cccatgggta ggtgccacca
1381 ccagagccca tgaggcttcg tgttctagaa ggtggtgggt tagtgccgca ctgagggcgt
1441 gtccgggagg gagcatgtgt caccagggct caggaaacag catgagtcat gacgcggggg
1501 tgtttaaggc attcgtgcca cagcggggac ctcggagcta tgccttgata aggcaagtga
1561 ggttacatgt acgatgatgc ggtttgtgct gcagactgga aaaaagcagg ggctttgtcc
1621 tctcctgacc ccctcacact ctgccttcac ggtaggctcc tgagaggggg gtctccaagg
1681 agggtgtcag tactgcagct tcagctggcg tggatggggt gcttacagga gcagcagggc
1741 tgagggagat gacagcagta cgaaccgtgg ctctcctgag gcctgggttt cctcatatgt
1801 aaaatggggg ttgcattaga ccataccctt ggcctgtggt taggcaaata gggatgaaag
1861 tggggccaag ggctgaagag ctgggtccgc tgccgtcgtt gcccttcttt cttgccaggt
1921 gagtgacttg cgcaatcagg tctacctgga ggatggactg gaccccttcc caggcgaggg
1981 ccgtgtggtg ggcaggcagc ggatgcacaa ggccttggac agggtggagg agcacccagg
2041 ctccaggatg actgctgaga aatttctgaa caggctcccc aagtttgtga tccggcaagg
2101 cgaggtgatt gacatccggg gccccatcag ggacaccttg cagaactgct gcccattgcc
2161 tgcccggatc caggagattg tggtggagac gcccaccttg gccgctgagc gagagaggag
2221 ccaggagtca cccaacacgc cggcaccccc gctctccatg ctgcgcatca agtctgagaa
2281 tggggaacag gccttcctac tgatgatgca gcctgacaac accattgggg acgtgcgagc
2341 tctgctagcg caggccaggg tcatggatgc ctctgccttt gagatcttca gcacattccc
2401 gcccaccctc taccaggacg atacactcac gctgcaggct gcaggccttg tgcccaaagc
2461 agcactgctg ctgcgggcac gccgagcccc gaagtccagc ctgaaattca gtcctggtcc
2521 ctctcccggt cccggcccca gtcccggtcc cggtcccggc cccagtccct gtcccggacc
2581 cagtcccagc ccccaataaa gcacccgccc cctcaacaaa aaaaaaaaaa aaa
//