LOCUS BC038100 2261 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens haloacid dehalogenase-like hydrolase domain containing
2, mRNA (cDNA clone MGC:32937 IMAGE:5266439), complete cds.
ACCESSION BC038100
VERSION BC038100.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2261)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2261)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC038100.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: k Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222341.
FEATURES Location/Qualifiers
source 1..2261
/db_xref="H-InvDB:HIT000051988"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32937 IMAGE:5266439"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2261
/gene="HDHD2"
/gene_synonym="3110052N05Rik"
/gene_synonym="DKFZP564D1378"
/db_xref="GeneID:84064"
/db_xref="HGNC:HGNC:25364"
CDS 134..913
/gene="HDHD2"
/gene_synonym="3110052N05Rik"
/gene_synonym="DKFZP564D1378"
/codon_start=1
/product="haloacid dehalogenase-like hydrolase domain
containing 2"
/protein_id="AAH38100.1"
/db_xref="GeneID:84064"
/db_xref="HGNC:HGNC:25364"
/translation="MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRF
VTNTTKESKQDLLERLRKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDF
KGIQTSDPNAVVMGLAPEHFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPG
PFVTALEYATDTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGM
LGILVKTGKYRASDEEKINPPPYLTCESFPHAVDHILQHLL"
BASE COUNT 707 a 388 c 516 g 650 t
ORIGIN
1 aacttccggc gtccgtcggg cagcagcggg gctgtctatc ccggctgagg acccgcggcc
61 agtgcgggtg gctggctttg ccattagcgg gggcctttcc tgaggacggc gtacggagtg
121 tggggaatga aggatggcag catgccgtgc attaaaagct gttttggtag atctcagtgg
181 cacacttcac attgaagatg cagctgtgcc aggcgcacag gaagctctta aaaggttacg
241 tggtgcttct gtaatcatta ggtttgtgac caatacaacc aaagagagca agcaagacct
301 gttagaaagg ttgagaaaat tggaatttga tatctctgaa gatgaaatat tcacatctct
361 gactgcagcc agaagtttac tagagcggaa acaagtcaga cccatgctgc tagttgatga
421 tcgggcacta cctgatttca aaggaataca aacaagtgat cctaatgctg tggtcatggg
481 attggcacca gaacattttc attatcaaat tctgaatcaa gcattccggt tactcctgga
541 tggagcacct ctgatagcaa tccacaaagc caggtattac aagaggaaag atggcttagc
601 cctggggcct ggaccatttg tgactgcttt agagtatgcc acagatacca aagccacagt
661 cgtggggaaa ccagagaaga cgttcttttt ggaagcattg cggggcactg gctgtgaacc
721 tgaggaggct gtcatgatag gagatgattg cagggatgat gttggtgggg ctcaagatgt
781 cggcatgctg ggcatcttag taaagactgg gaaatatcga gcatcagatg aagaaaaaat
841 taatccacct ccttacttaa cttgtgagag tttccctcat gctgtggacc acattctgca
901 gcacctattg tgaagcaatg tgtgcatctg aagcaacttg aaatgcagct tcttattgtc
961 tggaatgaat cccttaccaa ctcagtgcca gcatcggtag acaccagtca gtgctgatcg
1021 ctttttaacc ctcttttgtt gtgcattaat tagaaagaaa ggtattgaat tgcggctagc
1081 cagtaagcct tgctaatctc ttttattttg taactgaaga tgagacccaa agaaagggaa
1141 agctgagatt ttgtgccatt ccttttaaaa tattcatcag gttaggtggg gctgtggggg
1201 aaaagctact acagggaaga gtgttctctg ctgtctcttc actggaaaac agggaggggg
1261 gatttcagac tgtgaagaaa gttgaatggt ggtttttaaa ttataaagta atgtattaaa
1321 aggtgcatta ggctgtagtt ctaatattga gttcaactgt gaaatccatc agatgtgcca
1381 aatggagaag acagaaagca acaaagtgaa ttgttcttta gcccaagtgg tacagtgaat
1441 ttgctttaac agatgttgaa aactaaattt tctactgtat tcccagcacg ggtgacttct
1501 ttttctcttc attagccaga gatgactaat ttaaatttag aaccagattt taatttaaat
1561 taatatttcc attaataacc tattcattgc agatacctat tatactgtgt aacagttgtt
1621 ttggaaattt tatgtaaaat taaaactatc agtattttac agatgtttta attagacatt
1681 gttattaaca ggaacagtgc agaaactaga atcaagcctt ataatatctt atagaccatg
1741 catttttgaa gttagtgtcc actagggtcc tattaactgt acatttgcaa gatttcatta
1801 tttttgcctc tgacactatg ggaaaaattt tttagaagct attgggacag attcaagctt
1861 ttatgcactt ggttactaca gctgtaaaat gaaatctcgt cttgtagcat ggattattct
1921 tctcatgtta aacccaccaa aataaagggg actaaatagg taatgatttt cctagtgcat
1981 ttgcatactg tgataatcct gggccttgca atagttctac agggctcttg ggcattgaat
2041 tattaggatg taattgtaca tcattgtagt gttcacctta ttgaagctca ctctgatgtt
2101 aatgagcttc gggttttgat gcttgtttag agatcagcag tcttggatgg gagggaacaa
2161 agctaaataa atgttagttt ggtgaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaagaaaa aaaaaaaaaa a
//