LOCUS BC037392 2452 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB interacting factor, mRNA (cDNA clone MGC:34651
IMAGE:5191960), complete cds.
ACCESSION BC037392
VERSION BC037392.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2452)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2452)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: k Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2452
/db_xref="H-InvDB:HIT000051910"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34651 IMAGE:5191960"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2452
/gene="RABIF"
/gene_synonym="MSS4"
/gene_synonym="RASGFR3"
/db_xref="GeneID:5877"
/db_xref="HGNC:HGNC:9797"
/db_xref="MIM:603417"
CDS 38..409
/gene="RABIF"
/gene_synonym="MSS4"
/gene_synonym="RASGFR3"
/codon_start=1
/product="RAB interacting factor"
/protein_id="AAH37392.1"
/db_xref="GeneID:5877"
/db_xref="HGNC:HGNC:9797"
/db_xref="MIM:603417"
/translation="MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLF
LPSMRKKPALSDGSNPDGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPI
GWHCLDDKNSFYVALERVSHE"
BASE COUNT 670 a 574 c 507 g 701 t
ORIGIN
1 cgcagccgtg gctgaggagc ctgtggcggc agcggcgatg gaaccagcgg agcagccgag
61 cgagttagtg tcagccgagg gccgaaaccg gaaggcggtg ctgtgccagc gttgcggctc
121 ccgggtgctg cagccaggga ccgctctctt ctctcgccga cagcttttcc ttccctccat
181 gagaaagaag ccagctctgt ctgacggcag caatcctgac ggcgatctcc tccaggaaca
241 ctggctggtt gaggacatgt tcatttttga gaatgtgggc ttcaccaagg acgtgggcaa
301 catcaagttt ctggtctgcg cagactgtga aattggacca attggctggc attgcctaga
361 tgacaagaac agtttctatg tggccttgga acgagtttcc catgagtaac tgaggggagg
421 ggtactcagc tccatctcca aagataaacc tactccccac aagaactggc ctttaatgtg
481 gtataactgt tccgctgcct tcttgtctgt gctaatataa atactgagta ccagcatgtc
541 catttgaaca tgcagagggt taatcctgct tcctaaagcc tcaagtacat gcctcctgct
601 tagttcactt tgtatcacat ttcctaagct cccttttccc ccagttttgg gacactgtgc
661 ttacctccaa aaatctcatc tcttccctgg cattctccct aggctctgtt ttgcccaggg
721 gctcccgctt tttcttgctc tagaagagca gtattcaacc ttttagctat gatgacacat
781 aacaaaagat gcttatgtac taatagttga aatctgcctt tttctcattc aagaaggcat
841 acaaatatct gagagtgact ttgttgtatg gctacccttg tgatctacag taatttattc
901 tttctaaaag taaagcattt tcaaaactca gtatttaaac cactaaccag aaacattact
961 ttggatgcat ctctaatacc atgtttgagc acctctgctc taggttgaga atgacatttt
1021 attgtgaaga tgggtgtggt ccctcttccc ttgaaatctt gtagtttctt tttatattag
1081 ctcctcactg ctacagccta gaaggtgaga agcagatttt aaccccatct ggcagccatt
1141 caaggaaaac ccagccctgg ctgtttactc aggctctctt agaatgagag tggagggtgt
1201 aggatatgag ggttaggcct ttgccacatt atacaaaagt ttataatttg ccacacctgg
1261 acaagtaact ttcttctttt gttcataggc aagacttctt taatggatag tatcatttac
1321 tgaacctact gggcatggtc ctcatggagt tttggttcaa ctggaatctc tgtgccaacc
1381 caggatacaa acttccatcc agatgcatgg atacaaattt ccatagctcc ggggctgctc
1441 taacagtttg atatcagcag acgtgtttaa gccttcaact tgatttccaa ttattccatc
1501 atttctattc tgaaatgact cactgtcgta gaaggaagtt tattatataa ccaaggtttc
1561 aggtatcctc ctgtcaccac ctctactatt caggaggcct aaaattgaaa taagtactaa
1621 acagaaacct taccatctga agtcccttcc attgttttct agttgcttcc tcattccttt
1681 acccccaaac tttctaaggg ctccccgact gcagtgcaag gtggccttgg gcacagtttt
1741 gcaaccaacc tactcccctg gaaagatggc ttccttctcc aattagcctg aatgagcttt
1801 agtaagcaat tgagagaact gtgtttttcc gacaaacggt cacatgtcca tcgttatggc
1861 atgtgcagaa aaacagagtt atccacacaa gtcaggagca aaacccaagt agatgcctct
1921 aggggcacat ggcccctcac atcacaagcc agaacctaag ctaagcattt tttaaattga
1981 gtttgagact agcctgggca acatggtgag accccatctc tatttaaaaa atgaacaaaa
2041 ttacctgggc atagtggtgt atgcctgtag tccctgctac ttgggaggct caggtgggag
2101 gatcacttga gccccaaaga tggtggctgc agtaagccaa gatcacacca ctggcactcc
2161 agcctgggca acagagtgag accctgtctc aaacaaacaa caacagtaac aacaaaaaaa
2221 tatatagcga cttgaatagg aaaccatagt atttcattgt tttaatttgc atttatttta
2281 tttctagtga aacttttata tacgtatcgg tcatttctat ttcctttttt gagaactgcc
2341 aaatgttgcc ctagtagcca aaaatatcag gttgctattc tgccttttca gtttgatctg
2401 aaagaaataa aggcatttaa gcaatggaaa aaaaaaaaaa aaaaaaaaaa aa
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