LOCUS BC037306 5024 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:33903
IMAGE:5260986), complete cds.
ACCESSION BC037306
VERSION BC037306.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5024)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5024)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: f Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68223312.
FEATURES Location/Qualifiers
source 1..5024
/db_xref="H-InvDB:HIT000051901"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33903 IMAGE:5260986"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5024
/gene="CD47"
/gene_synonym="IAP"
/gene_synonym="OA3"
/db_xref="GeneID:961"
/db_xref="HGNC:HGNC:1682"
/db_xref="MIM:601028"
CDS 118..1035
/gene="CD47"
/gene_synonym="IAP"
/gene_synonym="OA3"
/codon_start=1
/product="CD47 protein"
/protein_id="AAH37306.1"
/db_xref="GeneID:961"
/db_xref="HGNC:HGNC:1682"
/db_xref="MIM:601028"
/translation="MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVT
NMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDK
SDAVSHTGNYTCEVTELTREGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQF
GIKTLKYRSGGMDEKTIALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTG
ILILLHYYVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLS
ILALAQLLGLVYMKFVASNQKTIQPPRNN"
BASE COUNT 1397 a 938 c 947 g 1742 t
ORIGIN
1 agcggagtgg gtcctgcctg tgacgcgcgg cggcggtcgg tcctgcctgt aacggcggcg
61 gcggctgctg ctccagacac ctgcggcggc ggcggcgacc acgcggcggg cgcggagatg
121 tggcccctgg tagcggcgct gttgctgggc tcggcgtgct gcggatcagc tcagctacta
181 tttaataaaa caaaatctgt agaattcacg ttttgtaatg acactgtcgt cattccatgc
241 tttgttacta atatggaggc acaaaacact actgaagtat acgtaaagtg gaaatttaaa
301 ggaagagata tttacacctt tgatggagct ctaaacaagt ccactgtccc cactgacttt
361 agtagtgcaa aaattgaagt ctcacaatta ctaaaaggag atgcctcttt gaagatggat
421 aagagtgatg ctgtctcaca cacaggaaac tacacttgtg aagtaacaga attaaccaga
481 gaaggtgaaa cgatcatcga gctaaaatat cgtgttgttt catggttttc tccaaatgaa
541 aatattctta ttgttatttt cccaattttt gctatactcc tgttctgggg acagtttggt
601 attaaaacac ttaaatatag atccggtggt atggatgaga aaacaattgc tttacttgtt
661 gctggactag tgatcactgt cattgtcatt gttggagcca ttcttttcgt cccaggtgaa
721 tattcattaa agaatgctac tggccttggt ttaattgtga cttctacagg gatattaata
781 ttacttcact actatgtgtt tagtacagcg attggattaa cctccttcgt cattgccata
841 ttggttattc aggtgatagc ctatatcctc gctgtggttg gactgagtct ctgtattgcg
901 gcgtgtatac caatgcatgg ccctcttctg atttcaggtt tgagtatctt agctctagca
961 caattacttg gactagttta tatgaaattt gtggcttcca atcagaagac tatacaacct
1021 cctaggaata actgaagtga agtgatggac tccgatttgg agagtagtaa gacgtgaaag
1081 gaatacactt gtgtttaagc accatggcct tgatgattca ctgttgggga gaagaaacaa
1141 gaaaagtaac tggttgtcac ctatgagacc cttacgtgat tgttagttaa gtttttattc
1201 aaagcagctg taatttagtt aataaaataa ttatgatcta tgttgtttgc ccaattgaga
1261 tccagttttt tgttgttatt tttaatcaat taggggcaat agtagaatgg acaatttcca
1321 agaatgatgc ctttcaggtc ctagggcctc tggcctctag gtaaccagtt taaattggtt
1381 cagggtgata actacttagc actgccctgg tgattaccca gagatatcta tgaaaaccag
1441 tggcttccat caaacctttg ccaactcagg ttcacagcag ctttgggcag ttatggcagt
1501 atggcattag ctgagaggtg tctgccactt ctgggtcaat ggaataataa attaagtaca
1561 ggcaggaatt tggttgggag catcttgtat gatctccgta tgatgtgata ttgatggaga
1621 tagtggtcct cattcttggg ggttgccatt cccacattcc cccttcaaca aacagtgtaa
1681 caggtccttc ccagatttag ggtactttta ttgatggata tgttttcctt ttattcacat
1741 aaccccttga aaccctgtct tgtcctcctg ttacttgctt ctgctgtaca agatgtagca
1801 ccttttctcc tctttgaaca tggtctagtg acacggtagc accagttgca ggaaggagcc
1861 agacttgttc tcagagcact gtgttcacac ttttcagcaa aaatagctat ggttgtaaca
1921 tatgtattcc cttcctctga tttgaaggca aaaatctaca gtgtttcttc acttcttttc
1981 tgatctgggg catgaaaaaa gcaagattga aatttgaact atgagtctcc tgcatggcaa
2041 caaaatgtgt gtcaccatca ggccaacagg ccagcccttg aatggggatt tattactgtt
2101 gtatctatgt tgcatgataa acattcatca ccttcctcct gtagtcctgc ctcgtactcc
2161 ccttccccta tgattgaaaa gtaaacaaaa cccacatttc ctatcctggt tagaagaaaa
2221 ttaatgttct gacagttgtg atcgcctgga gtacttttag acttttagca ttcgtttttt
2281 acctgtttgt ggatgtgtgt ttgtatgtgc atacgtatga gataggcaca tgcatcttct
2341 gtatggacaa aggtggggta cctacaggag agcaaaggtt aattttgtgc ttttagtaaa
2401 aacatttaaa tacaaagttc tttattgggt ggaattatat ttgatgcaaa tatttgatca
2461 cttaaaactt ttaaaacttc taggtaattt gccacgcttt ttgactgctc accaataccc
2521 tgtaaaaata cgtaattctt cctgtttgtg taataagata ttcatatttg tagttgcatt
2581 aataatagtt atttcttagt ccatcagatg ttcccgtgtg cctcttttat gccaaattga
2641 ttgtcatatt tcatgttggg accaagtagt ttgcccatgg caaacctaaa tttatgacct
2701 gctgaggcct ctcagaaaac tgagcatact agcaagacag ctcttcttga aaaaaaaaat
2761 atgtatacac aaatatatac gtatatctat atatacgtat gtatatacac acatgtatat
2821 tcttccttga ttgtgtagct gtccaaaata ataacatata tagagggagc tgtattcctt
2881 tatacaaatc tgatggctcc tgcagcactt tttccttctg aaaatattta cattttgcta
2941 acctagtttg ttactttaaa aatcagtttt gatgaaagga gggaaaagca gatggacttg
3001 aaaaagatcc aagctcctat tagaaaaggt atgaaaatct ttatagtaaa attttttata
3061 aactaaagtt gtacctttta atatgtagta aactctcatt tatttggggt tcgctcttgg
3121 atctcatcca tccattgtgt tctctttaat gctgcctgcc ttttgaggca ttcactgccc
3181 tagacaatgc caccagagat agtgggggaa atgccagatg aaaccaactc ttgctctcac
3241 tagttgtcag cttctctgga taagtgacca cagaagcagg agtcctcctg cttgggcatc
3301 attgggccag ttccttctct ttaaatcaga tttgtaatgg ctcccaaatt ccatcacatc
3361 acatttaaat tgcagacagt gttttgcaca tcatgtatct gttttgtccc ataatatgct
3421 ttttactccc tgatcccagt ttctgctgtt gactcttcca ttcagtttta tttattgtgt
3481 gttctcacag tgacaccatt tgtccttttc tgcaacaacc tttccagcta cttttgccaa
3541 attctatttg tcttctcctt caaaacattc tcctttgcag ttcctcttca tctgtgtagc
3601 tgctcttttg tctcttaact taccattcct atagtacttt atgcatctct gcttagttct
3661 attagttttt tggccttgct cttctccttg attttaaaat tccttctata gctagagctt
3721 ttctttcttt cattctctct tcctgcagtg ttttgcatac atcagaagct aggtacataa
3781 gttaaatgat tgagagttgg ctgtatttag atttatcact ttttaatagg gtgagcttga
3841 gagttttctt tctttctgtt tttttttttt ttttttttga ctaatttcac atgctctaaa
3901 aaccttcaaa ggtgattatt tttctcctgg aaactccagg tccattctgt ttaaatccct
3961 aagaatgtca gaattaaaat aacagggcta tcgcgtaatt ggaaatattt cttttttcag
4021 gatgctatag tcaatttagt aagtgaccac caaattgtta tttgcactaa caaagctcaa
4081 aacacgataa gtttactcct ccatctcagt aataaaaatt aagctgtaat caaccttcta
4141 ggtttctctt gtcttaaaat gggtattcaa aaatggggat ctgtggtgta tgtatggaaa
4201 cacatactcc ttaatttacc tgttgttgga aactggagaa atgattgtcg ggcaaccgtt
4261 tattttttat tgtattttat ttggttgagg gattttttta taaacagttt tacttgtgtc
4321 atattttaaa attactaact gccatcacct gctggggtcc tttgttaggt cattttcagt
4381 gactaatagg gataatccag gtaactttga agagatgagc agtgagtgac caggcagttt
4441 ttctgccttt agctttgaca gttcttaatt aagatcattg aagaccagct ttctcataaa
4501 tttctctttt tgaaaaaaag aaagcatttg tactaagctc ctctgtaaga caacatctta
4561 aatcttaaaa gtgttgttat catgactggt gagagaagaa aacattttgt ttttattaaa
4621 tggagcatta tttacaaaaa gccattgttg agaattagat cccacatcgt ataaatatct
4681 attaaccatt ctaaataaag agaactccag tgttgctatg tgcaagatcc tctcttggag
4741 cttttttgca tagcaattaa aggtgtgcta tttgtcagta gccatttttt tgcagtgatt
4801 tgaagaccaa agttgtttta cagctgtgtt accgttaaag gttttttttt ttatatgtat
4861 taaatcaatt tatcactgtt taaagctttg aatatctgca atctttgcca aggtactttt
4921 ttatttaaaa aaaaacataa ctttgtaaat attaccctgt aatattatat atacttaata
4981 aaacatttta agctaaaaaa aaaaaaacaa aaaaaaaaaa aaaa
//