LOCUS BC037169 3743 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2,
mRNA (cDNA clone MGC:45324 IMAGE:4994235), complete cds.
ACCESSION BC037169
VERSION BC037169.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3743)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3743)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62739164.
FEATURES Location/Qualifiers
source 1..3743
/db_xref="H-InvDB:HIT000051859"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45324 IMAGE:4994235"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3743
/gene="PLOD2"
/gene_synonym="LH2"
/gene_synonym="TLH"
/db_xref="GeneID:5352"
/db_xref="HGNC:HGNC:9082"
/db_xref="MIM:601865"
CDS 178..2454
/gene="PLOD2"
/gene_synonym="LH2"
/gene_synonym="TLH"
/codon_start=1
/product="procollagen-lysine, 2-oxoglutarate 5-dioxygenase
2"
/protein_id="AAH37169.1"
/db_xref="GeneID:5352"
/db_xref="HGNC:HGNC:9082"
/db_xref="MIM:601865"
/translation="MGGCTVKPQLLLLALVLHPWNPCLGADSEKPSSIPTDKLLVITV
ATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQKVRLMKEVMEHYAD
QDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKRLADKYPVVHIG
KRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKREAINITLDHKCKI
FQTLNGAVDEVVLKFENGKARAKNTFYETLPVAINGNGPTKILLNYFGNYVPNSWTQD
NGCTLCEFDTVDLSAVDVHPNVSIGVFIEQPTPFLPRFLDILLTLDYPKEALKLFIHN
KEVYHEKDIKVFFDKAKHEIKTIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYFSVD
ADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQG
NRVGVWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMTLQREKDS
PTPETFQMLSPPKGVFMYISNRHEFGRLLSTANYNTSHYNNDLWQIFENPVDWKEKYI
NRDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGKWSGGKHHDSRISGGY
ENVPTDDIHMKQVDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQR
SLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHE
GLPVKNGTRYIAVSFIDP"
BASE COUNT 1198 a 651 c 754 g 1140 t
ORIGIN
1 ccacgcgtcc gctcagctgc gttacgcgcc gctccggctg ccggccgcgc gccttgcccg
61 ccggctcccg cccgcaatcg gcggctcagg gcggacccgg gtctctgcgt tctcgcgaga
121 agcgcggcgc tgcggggccg tgggcgcctg agcccgcgcg gccctcgagg gccgaatatg
181 gggggatgca cggtgaagcc tcagctgctg ctcctggcgc tcgtcctcca cccctggaat
241 ccctgtctgg gtgcggactc ggagaagccc tcgagcatcc ccacagataa attattagtc
301 ataactgtag caacaaaaga aagtgatgga ttccatcgat ttatgcagtc agccaaatat
361 ttcaattata ctgtgaaggt ccttggtcaa ggagaagaat ggagaggtgg tgatggaatt
421 aatagtattg gagggggcca gaaagtgaga ttaatgaaag aagtcatgga acactatgct
481 gatcaagatg atctggttgt catgtttact gaatgctttg atgtcatatt tgctggtggt
541 ccagaagaag ttctaaaaaa attccaaaag gcaaaccaca aagtggtctt tgcagcagat
601 ggaattttgt ggccagataa aagactagca gacaagtatc ctgttgtgca cattgggaaa
661 cgctatctga attcaggagg atttattggc tatgctccat atgtcaaccg tatagttcaa
721 caatggaatc tccaggataa tgatgatgat cagctctttt acactaaagt ttacattgat
781 ccactgaaaa gggaagctat taacatcaca ttggatcaca aatgcaaaat tttccagacc
841 ttaaatggag ctgtagatga agttgtttta aaatttgaaa atggcaaagc cagagctaag
901 aatacatttt atgaaacatt accagtggca attaatggaa atggacccac caagattctc
961 ctgaattatt ttggaaacta tgtacccaat tcatggacac aggataatgg ctgcactctt
1021 tgtgaattcg atacagtcga cttgtctgca gtagatgtcc atccaaacgt atcaataggt
1081 gtttttattg agcaaccaac cccttttcta cctcggtttc tggacatatt gttgacactg
1141 gattacccaa aagaagcact taaacttttt attcataaca aagaagttta tcatgaaaag
1201 gacatcaagg tattttttga taaagctaag catgaaatca aaactataaa aatagtagga
1261 ccagaagaaa atctaagtca agcggaagcc agaaacatgg gaatggactt ttgccgtcag
1321 gatgaaaagt gtgattatta ctttagtgtg gatgcagatg ttgttttgac aaatccaagg
1381 actttaaaaa ttttgattga acaaaacaga aagatcattg ctcctcttgt aactcgtcat
1441 ggaaagctgt ggtccaattt ctggggagca ttgagtcctg atggatacta tgcacgatct
1501 gaagattatg tggatattgt tcaagggaat agagtaggag tatggaatgt cccatatatg
1561 gctaatgtgt acttaattaa aggaaagaca ctccgatcag agatgaatga aaggaactat
1621 tttgttcgtg ataaactgga tcctgatatg gctctttgcc gaaatgctag agaaatgact
1681 ttacaaaggg aaaaagactc ccctactccg gaaacattcc aaatgctcag ccccccaaag
1741 ggtgtattta tgtacatttc taatagacat gaatttggaa ggctattatc cactgctaat
1801 tacaatactt cccattataa caatgacctc tggcagattt ttgaaaatcc tgtggactgg
1861 aaggaaaagt atataaaccg tgattattca aagattttca ctgaaaatat agttgaacag
1921 ccctgtccag atgtcttttg gttccccata ttttctgaaa aagcctgtga tgaattggta
1981 gaagaaatgg aacattacgg caaatggtct gggggaaaac atcatgatag ccgtatatct
2041 ggtggttatg aaaatgtccc aactgatgat atccacatga agcaagttga tctggagaat
2101 gtatggcttc attttatccg ggagttcatt gcaccagtta cactgaaggt ctttgcaggc
2161 tattatacga agggatttgc actactgaat tttgtagtaa aatactcccc tgaacgacag
2221 cgttctcttc gtcctcatca tgatgcttct acatttacca taaacattgc acttaataac
2281 gtgggagaag actttcaggg aggtggttgc aaatttctaa ggtacaattg ctctattgag
2341 tcaccacgaa aaggctggag cttcatgcat cctgggagac tcacacattt gcatgaagga
2401 cttcctgtta aaaatggaac aagatacatt gcagtgtcat ttatagatcc ctaagttatt
2461 tacttttcat tgaattgaaa tttattttgg gtgaatgact ggcatgaaca cgtctttgaa
2521 gttgtggctg agaagatgag aggaatattt aaataacatc aacagaacaa cttcactttg
2581 ggccaaacat ttgaaaaact ttttataaaa aattgtttga tatttcttaa tgtctgctct
2641 gagccttaaa acacagattg aagaagaaaa gaaagaaaaa acttaaatat ttatttctat
2701 gctttgttgc ctctgagaat aatgacaatt tatgaatttg tgtttcaaat tgataaaata
2761 tttaggtaca aataacaaga ctaataatat tttcttattt aaaaaaagca tgggaagatt
2821 tttatttatc aaaatataga ggaaatgtag acaaaatgga tataaatgaa aattaccatg
2881 ttgtaaaacc ttgaaaatca gattctaact ggatttgtat gcaactaagt atttttctga
2941 acacctatgc aggtcttatt tacagtagtt actaagggaa cacacaaaga attacacaac
3001 gttttcctca agaaaatggt acaaaacaca accgaggagc gtatacagtt gaaaacattt
3061 ttgttttgat tggaaggcag attattttat attagtatta aaaatcaaac cctatgtttc
3121 tttcagatga atcttccaaa gtggattata ttaagcaggt attagattta ggaaaacctt
3181 tccatttctt aaagtattat caagtgtcaa gatcagcaag tgtccttaag tcaaacaggt
3241 tttttttgtt gttgtttttg ctttgtttcc ttttttagaa agttctagaa aataggaaaa
3301 cgaaaaattt cattgagatg agtagtgcat ttaattattt tttaaaaaac tttttaagta
3361 cttgaatttt atatcaggaa aacaaagttg ttgagccttg cttcttccgt tttgcccttt
3421 gtctcgctcc ttattctttt tttgggggga gggttatttg cttttttatc ttcctggcat
3481 aatttccatt ttattcttct gagtgtctat gttaacttcc ctctatcccg cttataaaaa
3541 aattctccaa caaaaatact tgttgacttg atgttttatc acttctctaa gtaaggttga
3601 aatatcctta ttgtagctac tgtttttaat gtaaaggtta aacttgaaaa gaaattctta
3661 atcacggtgc caaaattcat tttctaacac catgtgttag aaaattataa aaaataaaat
3721 aattttagaa aaaaaaaaaa aaa
//