LOCUS BC036903 1818 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens SNHG3-RCC1 readthrough transcript, mRNA (cDNA clone
MGC:46387 IMAGE:4536608), complete cds.
ACCESSION BC036903
VERSION BC036903.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1818)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1818)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: b Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20149512.
FEATURES Location/Qualifiers
source 1..1818
/db_xref="H-InvDB:HIT000051842"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46387 IMAGE:4536608"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1818
/gene="SNHG3-RCC1"
/db_xref="GeneID:751867"
/db_xref="HGNC:HGNC:33536"
CDS 297..1562
/gene="SNHG3-RCC1"
/codon_start=1
/product="SNHG3-RCC1 readthrough transcript"
/protein_id="AAH36903.1"
/db_xref="GeneID:751867"
/db_xref="HGNC:HGNC:33536"
/translation="MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGD
VGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD
TSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK
KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ
GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG
TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE
KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM
GKQLENRVVLSVSSGGQHTVLLVKDKEQS"
BASE COUNT 441 a 437 c 552 g 388 t
ORIGIN
1 ccacgcgtcc ggattcgcag tggtcgcttc ttctccttgg atttgttaag gattccaagt
61 aactcttatt tggagagaag acgatctgca cttcgcattt tggcattgac atttaatttt
121 agggtccttt atatagaagg gagactacat gaatgtgtaa gatcttggag gaagacagca
181 gagagagaga gagagatcag agatcccagg gttaaaagtt ggagaaattt cacagtacat
241 catccaaaag aggagtccat gatggaggca gaggtaaact tggagaggac aggaagatgt
301 cacccaagcg catagctaaa agaaggtccc ccccagcaga tgccatcccc aaaagcaaga
361 aggtgaaggt ctcacacagg tcccacagca cagaacccgg cttggtgctg acactaggcc
421 agggcgacgt gggccagctg gggctgggtg agaatgtgat ggagaggaag aagccggccc
481 tggtatccat tccggaggat gttgtgcagg ctgaggctgg gggcatgcac accgtgtgtc
541 taagcaaaag tggccaggtc tattccttcg gctgcaatga tgagggtgcc ctgggaaggg
601 acacatcagt ggagggctcg gagatggtcc ctgggaaagt ggagctgcaa gagaaggtgg
661 tacaggtgtc agcaggagac agtcacacag cagccctcac cgatgatggc cgtgtcttcc
721 tctggggctc cttccgggac aataacggtg tgattggact gttggagccc atgaagaaga
781 gcatggtgcc tgtgcaggtg cagctggatg tgcctgtggt aaaggtggcc tcaggaaacg
841 accacttggt gatgctgaca gctgatggtg acctctacac cttgggctgc ggggaacagg
901 gccagctagg ccgtgtgcct gagttatttg ccaaccgtgg tggccggcaa ggcctcgaac
961 gactcctggt ccccaagtgt gtgatgctga aatccagggg aagccggggc cacgtgagat
1021 tccaggatgc cttttgtggt gcctatttca cctttgccat ctcccatgag ggccacgtgt
1081 acggcttcgg cctctccaac taccatcagc ttggaactcc gggcacagaa tcttgcttca
1141 taccccagaa cctaacatcc ttcaagaatt ccaccaagtc ctgggtgggc ttctctggtg
1201 gccagcacca tacagtctgc atggattcgg aaggaaaagc atacagcctg ggccgggctg
1261 agtatgggcg gctgggcctt ggagagggtg ctgaggagaa gagcataccc accctcatct
1321 ccaggctgcc tgctgtctcc tcggtggctt gtggggcctc tgtggggtat gctgtgacca
1381 aggatggtcg tgttttcgcc tggggcatgg gcaccaacta ccagctgggc acagggcagg
1441 atgaggacgc ctggagccct gtggagatga tgggcaaaca gctggagaac cgtgtggtct
1501 tatctgtgtc cagcgggggc cagcatacag tcttattagt caaggacaaa gaacagagct
1561 gatgaagcct ctgagggcct ggcttctgtc ctgcacaacc tccctcacag aacagggaag
1621 cagtgacagc tgcagatggc agcgggcctc tccccagccc tgagcactgt gtcagttcct
1681 gccttttctc atcagcagaa cagaatcctt ttcctctttt ccttcctcct ctttggaatt
1741 ttcctgggac ctacagaata aaggggggga tggacagggg gttttcaaaa ggaaaaaaaa
1801 aaaaaaaaaa aaaaaaaa
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