LOCUS BC036674 4666 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protocadherin alpha 6, mRNA (cDNA clone MGC:33675
IMAGE:5263226), complete cds.
ACCESSION BC036674
VERSION BC036674.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4666)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4666)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036674.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: h Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14165384.
FEATURES Location/Qualifiers
source 1..4666
/db_xref="H-InvDB:HIT000051764"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33675 IMAGE:5263226"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4666
/gene="PCDHA6"
/gene_synonym="CNR2"
/gene_synonym="CNRN2"
/gene_synonym="CRNR2"
/gene_synonym="PCDH-ALPHA6"
/db_xref="GeneID:56142"
/db_xref="HGNC:HGNC:8672"
/db_xref="MIM:606312"
CDS 115..2967
/gene="PCDHA6"
/gene_synonym="CNR2"
/gene_synonym="CNRN2"
/gene_synonym="CRNR2"
/gene_synonym="PCDH-ALPHA6"
/codon_start=1
/product="PCDHA6 protein"
/protein_id="AAH36674.1"
/db_xref="GeneID:56142"
/db_xref="HGNC:HGNC:8672"
/db_xref="MIM:606312"
/translation="MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTF
VGRIAQDLGLELAELVPRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAEC
SIHLEVIVDRPLQVFHVDVEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDA
DVGSNSILTYKLSSSEYFGLDVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGG
KPELTGTVQLLVTVLDVNDNAPTFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGA
ISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHC
TVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVIALISVNDLDSGANGQVNCSLTPH
VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWATASLSVEVADMND
NAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERALSSYI
SVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALL
APRVGGTGGAVSELVPRSLGAGQVVAKVRAVDADSGYNAWLSYELQPPASSARFPFRV
GLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRA
SVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTEGACTADKPTLV
CSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCPIMMGKAENQDLNEDHDAK
PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP
PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFI
TFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ"
BASE COUNT 1227 a 1128 c 1198 g 1113 t
ORIGIN
1 gactgttgaa tgatggcgga cgcagaagaa atggattaat aaattccaga acatacagta
61 ttttatcttt atgcggaaga tcttctaatg gaaataaaac cagaggtatt tgacatggtg
121 tttaccccgg aggatagatt gggaaagcaa tgtctgctcc tcccgcttct gctcctcgca
181 gcctggaagg tggggagcgg ccagctccac tactccgtac ccgaggaggc caaacacggc
241 accttcgtgg gccggatcgc gcaggacctg gggctggagc tggcggagct ggtgccgcgc
301 ctgttcagga tggcctccaa agaccgcgag gaccttctgg aggtaaatct gcagaatggc
361 attttgtttg tgaattctcg gatcgaccgc gaggagctgt gcgggcggag cgcggagtgc
421 agcatccacc tggaggtgat cgtggacagg ccgctgcagg ttttccatgt ggacgtggag
481 gtgagggaca ttaacgacaa cccgcccttg ttcccggtag aggaacaaag agtgctgatt
541 tacgaatcta ggctgccaga ttctgtgttt ccactggagg gcgcgtccga tgcagatgtt
601 ggctcaaatt ccatcttaac ctataaactc agttctagcg aatacttcgg gctagatgtg
661 aaaataaaca gtgatgacaa taaacaaatt gggctcttat taaagaaatc cttggacaga
721 gaggaagctc ctgcacacaa cttattcctg acagccacag atgggggcaa acctgagctc
781 acaggcactg ttcagctgct ggtcacagtg ctggatgtga atgataatgc tcccactttc
841 gaacagtctg aatacgaagt aagaatattc gaaaatgcag acaacggaac aacagttatc
901 agactgaatg cttctgatcg ggatgaagga gcgaatgggg caatttcata ttcttttaat
961 agccttgttg cagccatggt tattgaccac tttagcatag atcgaaatac gggagaaata
1021 gtgattcggg gtaatttgga ttttgaacaa gaaaacttat acaaaatcct cattgacgcc
1081 acggacaaag gccatcctcc catggcgggt cattgcaccg ttttagtgag aattttggat
1141 aaaaatgata acgtccctga gatagcactg acttccttat ccttgcctgt acgtgaagac
1201 gctcaatttg gtactgtcat cgccctaatt agcgtgaacg acctcgattc aggtgccaac
1261 gggcaggtga actgctcgct gacgcctcac gtccctttca agctggtgtc caccttcaag
1321 aattactact cgttggtgct ggacagtgcc ctggaccgcg agagcgtgtc ggcctatgag
1381 ttggtggtga ccgcgcggga cgggggctcg ccttcgctgt gggccacagc cagcttgtct
1441 gtggaggtgg ccgacatgaa tgacaatgct ccggcgttcg cgcagcccga gtacacagtg
1501 ttcgtgaagg agaacaaccc gccgggctgc cacatcttca cggtgtctgc gcgagacgcg
1561 gacgcgcagg agaacgcgct ggtgtcctac tcgctggtgg agcggcgggt gggcgagcgc
1621 gcgttgtcga gctacatttc ggtgcacgcg gagagcggca aggtgtacgc gctgcagccg
1681 ctggaccacg aggagctaga gctgctgcag tttcaggtga gcgcgcgcga cgcgggcgtg
1741 ccgcctctgg gcagcaacgt gacgctgcag gtgttcgtgc tggacgagaa cgacaacgcg
1801 ccggcgctgc tggcgcctcg ggtgggtggt actggtggtg cagtgagcga gctggtgccg
1861 cggtcactgg gtgcaggcca agtggtggcg aaggtgcgcg cagttgacgc cgactcaggc
1921 tacaacgcgt ggctttcgta tgagctgcag cccccggcaa gcagcgctcg cttcccgttt
1981 cgcgtggggc tgtacacggg cgagatcagc accactcgtg tcctggacga agcggactct
2041 ccgcgccacc ggctgctggt gctggtgaaa gaccacggtg agccggcgct gacagcgacg
2101 gccacggttc tggtgtcgct ggtggagagt ggccaggctc caaaggcgtc atcacgggcg
2161 tcggtgggcg ccgcgggccc agaggcggcg ctggtggatg tcaacgtgta cctgatcatc
2221 gccatctgcg cggtatccag cctgctggtc ctcacgctac tgctgtacac agcgctgcgg
2281 tgctcggcgc cacccaccga gggcgcgtgc acggcggaca agcccacgct ggtgtgctcc
2341 agcgcagtgg ggagctggtc gtactcgcag cagaggcggc agagggtgtg ctccggggag
2401 ggcccaccca agatggatct catggccttt agccccagcc tttcaccttg tcctattatg
2461 atgggtaagg cggagaatca ggatttaaat gaagatcatg atgccaaacc acgacagccc
2521 aaccctgact ggcgttactc tgcctccctg agagcaggca tgcacagctc tgtgcaccta
2581 gaggaggctg gcattctacg ggctggtcca ggagggcctg atcagcagtg gccaacagta
2641 tccagtgcaa caccagaacc agaggcagga gaagtgtccc ctccagtcgg tgcgggtgtc
2701 aacagcaaca gctggacctt taaatacgga ccaggcaacc ccaaacaatc cggtcccggt
2761 gagttgcccg acaaattcat tatcccagga tctcctgcaa tcatctccat ccggcaggag
2821 cctactaaca gccaaattga caaaagtgac ttcataacct tcggcaaaaa ggaggagacc
2881 aagaaaaaga agaaaaagaa gaagggtaac aagacccagg agaaaaaaga gaaagggaac
2941 agcacgactg acaacagtga ccagtgaggt cctcaaatgg aaacaagcca cttagccagt
3001 ttttgtaata atggcaaatc tctcccatgt agcaattccc tgctcctttt tcctatctac
3061 atgagccctc ttagagacct cagaaatctg cagaaagttc cctgtgtctg tctagaacgc
3121 atttaacagg ttttgtcgta aaagctttac taagtctggt gttaactctt tctctccact
3181 ctggcttgtt ttcagaacct aaaaagcaga cccaagtttc ctttctcctc cgccgcaaag
3241 gagaggcttc ccagccccgc cagtgagagg ttggactctc tgccctgtgc tccggggatc
3301 ctgtcttgat gacacttgca gggcaggctg aaaagttttg agattgagca gcttgggagt
3361 ttgtggccac tgggtatgtg tggctaccgc gggtatgcga gtgccagata ttggctgaga
3421 cgagccagct tagactaatt ggtacaagga aggcaagaaa acaaagacaa ataaacagcg
3481 gaagttatca gtatggaggg gaagtgtaaa cttaaaggga ccagactttc taaatcttac
3541 aactcaagag gtggcagcca ccctctagga gacaaaacta cccccgctga caaggcttta
3601 ggagacccta aagtctgttg gctgtgacgt cattatacct aaaatctgca tcatacctac
3661 aagccaacag ttcagtgttt taacagagaa ccaccctggg aaacagaagc agatctgatg
3721 tgtttcctat acatgtcctg tgctcacttt attaaaaatt cttttgcaca caatgtttat
3781 gaaaaggcca gatccttttc caatacttat gcaaaagcaa aagaaaaccc cgacacctca
3841 cctttcgctg tttgttgttt catagattta tttaaaaaaa gagaaagtct atagctataa
3901 atctttaaag agaaatatga atacaattcc cctaaactct cctcaaaaga gaattcagtc
3961 tacagccatt taaatgatca ttgctgctac agaagtgctt taagagaatt gcctgaaaca
4021 tctgtattat atcggccacc tgccaatcac agctttactc tttcaggtca ctctggggct
4081 gcctcttgca tgtattacta aataaaatga tctctctttc tctctctctc tctcttttct
4141 aagaaacaat tatgtgcact ttgatacaca accttctcta accaactata tatcaagacc
4201 caaaaattga agaaaaatat tgttttctca tacagtgagc agatttttca atctactaat
4261 tctgtgactt gtcttggtgt gctagcctac accttctctt tggtttagtt ttccttttct
4321 ataacactct gaattgctaa tcttactaac acctatgatg ttacctgaaa tcaatctccc
4381 atatgtatgc tgtatgctat gctaagactc ctgaaatata cttactctgt gcttgtgtat
4441 gtgaatgtta atgcaactat tacctagagt gaactttaag ctttattgtt gaatgtaatt
4501 ccattatatt tccttttgta cacctgtgaa aaagtggagt agtgtttttt taaccattgt
4561 taatcagctt ttgtgtatga aagacacagt aaaatttctt tcttaaatca aaaaaaaaaa
4621 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa taaaaaaaaa aaaaaa
//