LOCUS BC036556 3237 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens SET domain containing 4, mRNA (cDNA clone MGC:43390
IMAGE:5266627), complete cds.
ACCESSION BC036556
VERSION BC036556.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3237)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3237)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036556.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: p Column: 10
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3237
/db_xref="H-InvDB:HIT000051742"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43390 IMAGE:5266627"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3237
/gene="SETD4"
/db_xref="GeneID:54093"
/db_xref="HGNC:HGNC:1258"
CDS 398..1648
/gene="SETD4"
/codon_start=1
/product="SETD4 protein"
/protein_id="AAH36556.1"
/db_xref="GeneID:54093"
/db_xref="HGNC:HGNC:1258"
/translation="MNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSL
QEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHAGHRSLW
KPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSLQPLF
AEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPHVQ
VKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR
EILVKYLPSTDKQMDKKISILKDHGYIENLTFGWDGPSWRLLTALKLLCLEAEKFTCW
KKVLLGEVISDTNEKTSLDIAQKICYYFIEETNAVLQKVSHMKDEKEALINQLTLVES
LWTEELKILRASAETLHSLQTAFT"
BASE COUNT 782 a 733 c 836 g 886 t
ORIGIN
1 aggcaggcgc gacagccttc agcctctccc tctgcagttt tggccggttc ctttaacttg
61 ccttcatctg gggctgtttg gtatttccac gtgccttggg cccgcccact gcagcctcca
121 tcttggaagc ggccgccggc gcctagattg agcatttcca cagaaattac agttttgtcc
181 tttttgaaaa aatagaactg tatttcagaa aaaagaaact acagttttag catgcagaaa
241 ggaaaaggga gaacaagccg gatcagaaga cgaaaactct gcggaagttc tgaatcaaga
301 ggagagatgg ggtctttctg tgttgggcag gctgggctca aactcctggc ctcaagcagt
361 cctcccgcct tggcctccca aatgctggga atacagaatg aatgagagcc acaagtctga
421 atttatagag ctgaggaagt ggctgaaagc taggaagttt caagattcaa acttagcgcc
481 tgcttgtttt ccaggtacag gaagagggct gatgagtcaa acatccctgc aggagggaca
541 gatgattatt tcgttgcctg agagttgcct gctcactacg gacacagtga ttcgaagcta
601 cttaggggca tacattacta agtggaagcc tcctccatct cctctgctgg cgctgtgcac
661 ctttttagtt tcagaaaagc atgctgggca ccgatctctt tggaagcctt acctggagat
721 tttacccaag gcgtatacct gccctgtttg tttggagccg gaagtggtga accttcttcc
781 caaatcttta aaagcaaagg ctgaagagca gagagcccac gtgcaggagt tctttgcttc
841 ctccagagac tttttctctt ctctgcagcc tctgtttgcg gaggctgttg acagcatctt
901 cagctacagt gccctgctgt gggcttggtg caccgtcaac accagagccg tgtacctgag
961 gcccaggcag cgggaatgcc tttctgcaga gccggacacc tgtgcactcg ctccgtacct
1021 ggacctgctg aatcatagcc cacatgtcca ggtaaaagca gcgtttaatg aagaaactca
1081 ttcttacgaa attagaacga cttcacgttg gagaaagcat gaagaggtat tcatctgtta
1141 cggccctcac gataatcaac ggctgttcct ggaatacgga tttgtttctg tccataatcc
1201 tcatgcttgt gtttatgtct caagagaaat acttgttaaa tatcttccat caacagataa
1261 acagatggac aaaaagattt ctattttaaa ggatcatggc tatatagaaa atttgacatt
1321 tggatgggat ggaccatctt ggaggctact cacagccctt aagttgttat gtctggaagc
1381 tgagaaattt acatgctgga aaaaagtact tcttggggag gtaatttcag atacgaatga
1441 gaagacaagt ttggacatag cccagaaaat atgctattat ttcatagaag agactaatgc
1501 tgtgcttcaa aaggtgtctc atatgaagga tgaaaaagag gccctgataa accaactaac
1561 tttggtggaa tccttgtgga cggaagagct aaagattctc agggcatctg ccgagaccct
1621 gcacagtttg caaacagctt ttacctgatt tcaccgaagc gcatttggtc acctcctctg
1681 gtgggtgtta gtcacacatt ttagactaag gtttgatgga ctaaatttat atagtttaga
1741 gtcgatgagt tgtgtctact caacaattag gaacttaatc cttttccttt tgcttttcct
1801 acagaaacaa aagttaattt tgaagagcat catcatgggc tggggtggtg gctgccccca
1861 ggacatgcag gatttctgca gggggcagca caggttctgg gattgtgagg ctgtgagtga
1921 aggtggacaa gctgtctgga tggcaggtct aatgctcttc cgaataaagt gctgaactgt
1981 gaggagagag gcggactgtg aggcagccag gagccagctg cgtccgtgtg tggtctgtca
2041 ccacggggcc tgcttcttat ctgacacagc agctatcaga gtctagtggt tgtgctttta
2101 agatgctctg ataccattgg gttaaggggc agattggcgg tgggtgtggg gcagtgtgag
2161 gtagtcctgg atccccgcca gggtggccca gacgccagcc ctttcctgtg tggctgcact
2221 gaggtgggtg ttgaagagcc ccctagggga cacacagctt ccaggaggag ggaatgtcct
2281 ctaagcatgc tcctggcctc tcaaggtggc gcttgtctaa ttattcactt gggaagaatg
2341 actagctcag ccagcggctc tttctgcttt gttctggcga ctttcctggg caggcctttc
2401 cacctgggga gctggctcat cctgcacagc tgggccgtgg tgggcctgtc tgcttgattc
2461 tggggttcag tgtaggtcag ctgatggcga accatggtgg tggtttggct tctgttctta
2521 ttcttgagtt ttgataccac gcagaccttg ggtggggaga gcttcctgca cagctctcag
2581 cggcctgtgg ccttggaact gcctgcgtaa gtaacggagg ggctgctggt cctgttcagg
2641 cccgtgctgg ggacgccgct tagacaatgt tgcccagagt cctgtttacc ctcccagggt
2701 tcattcttcc caagaactca aattcctttc tcattggagc ctagtgaaac caaatgaacg
2761 ggacctgctg gcctcaggag gcaggcagag tttaaaataa aactttctca tgatttcttg
2821 aacatctttc cctgtttgta tatacacttt gtgtttattt ttcagtagct gcagtatatt
2881 ttttttcaat attcagtata atgcagtgta tttcatcata tgctgtatgg agagtgggca
2941 gacttctgtg gagggcccga tagtaaccat ttgaagcttt ctggacctgt ggtcttagtc
3001 ccagcgattc tgcagagcgg ccatcggcag catgtcaacc atttgcatgg ctgggctcca
3061 gggaaactac tgacaacgac aggtggtggg ccatagtttc ctgacccctg tgctatgcca
3121 gaatttcttt ttcctcttcc ctatgagtgg acctaaatat gttaattcct tttcaccttt
3181 caaaacggac agccccttga acattaaaaa ctttgcagac ccaaaaaaaa aaaaaaa
//