LOCUS BC036533 3987 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens junctophilin 3, mRNA (cDNA clone MGC:33713
IMAGE:5264853), complete cds.
ACCESSION BC036533
VERSION BC036533.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3987)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3987)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036533.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21704282.
FEATURES Location/Qualifiers
source 1..3987
/db_xref="H-InvDB:HIT000051734"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33713 IMAGE:5264853"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3987
/gene="JPH3"
/gene_synonym="CAGL237"
/gene_synonym="HDL2"
/gene_synonym="JP-3"
/gene_synonym="JP3"
/db_xref="GeneID:57338"
/db_xref="HGNC:HGNC:14203"
/db_xref="MIM:605268"
CDS 243..2489
/gene="JPH3"
/gene_synonym="CAGL237"
/gene_synonym="HDL2"
/gene_synonym="JP-3"
/gene_synonym="JP3"
/codon_start=1
/product="junctophilin 3"
/protein_id="AAH36533.1"
/db_xref="GeneID:57338"
/db_xref="HGNC:HGNC:14203"
/db_xref="MIM:605268"
/translation="MSSGGRFNFDDGGSYCGGWEDGKAHGHGVCTGPKGQGEYTGSWS
HGFEVLGVYTWPSGNTYQGTWAQGKRHGIGLESKGKWVYKGEWTHGFKGRYGVRECAG
NGAKYEGTWSNGLQDGYGTETYSDGGTYQGQWVGGMRQGYGVRQSVPYGMAAVIRSPL
RTSINSLRSEHTNGTALHPDASPAVAGSPAVSRGGFVLVAHSDSEILKSKKKGLFRRS
LLSGLKLRKSESKSSLASQRSKQSSFRSEAGMSTVSSTASDIHSTISLGEAEAELAVI
EDDIDATTTETYVGEWKNDKRSGFGVSQRSDGLKYEGEWASNRRHGYGCMTFPDGTKE
EGKYKQNILVGGKRKNLIPLRASKIREKVDRAVEAAERAATTAKQKAEIAASRTSHSR
AKAEAALTAAQKAQEEARIARITAKEFSPSFQHRENGLEYQRPKRQTSCDDIEVLSTG
TPLQQESPELYRKGTTPSDLTTDDSPLQSFPTSPAATPPPAPAARNKVAHFSRQVSVD
EERGGDIQMLLEGRAGDCARSSWGEEQAGGSRGVRSGALRGGLLVDDFRTRGSGRKQP
GNPKPRERRTESPPVFTWTSHHRASNHSPGGSRLLELQEEKLSNYRMEMKPLLRMETH
PQKRRYSKGGACRGLGDDHRLEDRGFGVQRLRSKAQNKENFRPASSAEPAVQKLASLR
LGGAEPRLLRWDLTFSPPQKSLPVALESDEENGDELKSSTGSAPILVVMVILLNIGVA
ILFINFFI"
BASE COUNT 812 a 1248 c 1258 g 669 t
ORIGIN
1 agcgcgagac gctggtcagg ctccgcggcg cagctcgaaa aggaataatc gcccccgatt
61 gactgaaatt cctccggagc cggcgccgcg gccgcccgcg cccgagaccg cgctccgggg
121 ccgcgtcctc ctctcctccg gaaaacgctc gcgacccagg gccgccggcg gccgcgactc
181 tgctgtgtcg atcgcctgag tccgttttca ccgtttgcgg gatctggaac cgagttacat
241 gcatgtccag tgggggcagg tttaattttg acgacggagg gtcctactgt ggaggctggg
301 aggacggcaa ggcgcacggc catggcgtct gcaccggccc caagggccaa ggcgaataca
361 ccggctcgtg gagccacggc ttcgaggtgc tgggcgtcta cacctggccc agcggcaaca
421 cgtaccaggg cacctgggcg cagggcaagc gccacggcat cggcctggag agcaagggga
481 agtgggtgta caagggcgag tggacgcacg gattcaaggg gcgctacggg gtgcgggagt
541 gcgcgggcaa cggggccaaa tacgaaggga cctggagcaa cgggctgcag gacggctacg
601 ggaccgagac ctactcggac ggagggacct accagggcca gtgggtcggt ggcatgcgcc
661 agggctacgg cgtccggcag agcgtcccgt atggcatggc cgcggtcatc cgctcacccc
721 tgaggacgtc catcaactcc ctgcgcagcg agcacaccaa cggcacggcg ctgcatcccg
781 acgcctctcc ggcggtggcc ggcagcccgg ccgtgtcccg cgggggcttc gtgctcgtgg
841 cccacagtga ctccgagatc ctcaagagca agaagaaggg gctgtttcgg cgctcgctgc
901 tgagtgggct gaagctgcgc aagtcggagt ccaagagcag cctggccagc caacgcagca
961 agcagagctc ctttcgcagc gaggcgggca tgagcaccgt cagctccacg gccagcgaca
1021 tccactccac catcagcctg ggcgaggctg aggccgagct ggcggtcatc gaggacgaca
1081 tcgacgccac caccaccgag acctacgtgg gcgagtggaa gaacgacaaa cgctccggct
1141 tcggcgtgag ccagcgctcg gacgggctca agtacgaggg cgagtgggcc agcaaccggc
1201 gccatggcta cggctgcatg accttcccgg acggcaccaa ggaggagggc aagtacaagc
1261 agaacatcct cgtcggcggc aagcgcaaga acctcatccc cctgcgggcc agcaagatcc
1321 gcgagaaggt ggaccgcgcc gttgaggccg ctgagcgggc cgccaccacc gccaagcaga
1381 aggctgagat cgcggcttcc aggacctccc actctcgggc aaaggccgag gcagccctca
1441 cagcagctca gaaagcccag gaggaggcgc ggatcgccag gatcactgcc aaagagttct
1501 ccccttcctt ccagcaccgg gaaaacgggc tggagtacca gaggccgaag cgtcagacct
1561 cctgtgacga catcgaggtg ctgtccaccg ggacacccct gcagcaggag agccccgagc
1621 tgtaccgcaa gggcaccact ccctccgacc tgaccaccga cgacagcccc ctgcagagct
1681 tccccaccag ccccgcggcc accccgccgc ccgcgcccgc cgccaggaac aaggtcgccc
1741 acttctcgag gcaggtgtcg gtggacgagg agcggggcgg ggacatccag atgctcctgg
1801 agggccgggc cggggactgc gcccgcagca gctggggcga ggagcaggcc gggggctcca
1861 ggggtgtccg cagcggtgcc ctgcgcggcg gcctgctcgt ggatgacttc cgcacccgag
1921 gttcgggccg caagcagccc gggaacccca agccgcggga gcggcggacg gagtcacccc
1981 ccgtgttcac gtggacttcc caccaccggg ccagcaacca cagccccgga ggctccaggc
2041 tgctggagct gcaggaggag aagctgagca actaccggat ggagatgaaa cccttgctga
2101 ggatggagac gcatccccag aaaagacgct acagcaaggg cggcgcctgc cggggcttgg
2161 gggacgacca ccgcctcgag gaccggggct tcggggtgca gagactgcgg tccaaggccc
2221 agaacaagga gaacttcagg ccggcctcct ccgcggagcc cgccgtgcag aaactggcga
2281 gcctgcggct gggcggggcc gagccccggt tgctgcgttg ggacttgacc ttctccccgc
2341 cccagaaatc cttgcctgtc gctctagagt ccgacgagga gaatggggat gagctcaagt
2401 ccagtacggg ctcagcgcct atcctggtgg tcatggtgat cttgctcaac atcggagtcg
2461 ccattctgtt tattaacttt ttcatctgat gagatgtcgc ggtagcaaaa atagagaaag
2521 ggtagaaaaa agggacatta aaattaaaag caaaaccaca agaagggaaa gaccgcaact
2581 cggacagccc agcgacttcc aagtcctctc acagaagaac cacacgattg ggtatcactc
2641 acagtttgcc tttttttctg ggtaatgttt tttggatttt agccaaaatt ctttgcttgt
2701 ataacactct gctgtgtggc atggcagaag gaggccagca cgcagcccct ccagctccac
2761 gtggagacag aagggatccc ggcacatcag tggtaacagc ggacgttgtc atcgtggtca
2821 cacgtcccgt cttgggtgtg gatggagggc agcccggggc agagcctcag ccccgcggcc
2881 cctgagtggc agggctgact cccgtcgaca cgagcttaga aagtggattc actgctttct
2941 ctgtctagaa cagacgggtg acaagtatgg gcaggaggca tggggcaggg tggcccaccc
3001 cagtgggcag tagcctggcc tttttctgtg tgagatctgt gctgcacacc tgagggaggg
3061 ggagggatcg gccacctcct ccctgtgaga cggatgcagg tacttccctc ttctcggcac
3121 tgcccccggc cttccatgag aagccgactc cccacaccga gttttaaagc aaagcccttt
3181 tcttctgctg cccactcact gtgggtccca ttcggctgtt tcccccacca gaccccaggg
3241 aagccggggc ccactccgat ccgcctgggc tcagctaagc acggaagcca agggggctgt
3301 gccgtggagc tgggctcgcg ccggggctct gggtgtgtgc gcttggcgtg cagggtggac
3361 gcgtggggtt ccgtgtcccc agcagtgagg gccctagagg acgccttctc ccatggttac
3421 tgatctccac gggttttcac atctctgtac tgtgcctgcc tcaacttccc ctaacagata
3481 tgcatattcc ttccagatgc ctcagtgcta caccacagtg ggcctggtcc caggacagga
3541 atgcggttca aacccagtgg cttgaaactt cctgagaaac tgtagcatat ccagccccct
3601 aaaatgtaca atgtaacttg ttcagtccaa caaaaacagg ttccttatgt ttctgccttc
3661 tccaccaggg tcgctccatc acccaaacaa aagaacaagg tttgccagga tgtccgagtg
3721 ccccctggcc ctggctctcg tgtgcatgga cgtgcctgag gggtccgggc acggccatac
3781 gcaggacccc tgtgcccggg gaggcgctgc agggattccc catccggtcg tcttggggcc
3841 agcccgtctt atggactctg ccttgctttg cttatgttta gctgtttctc tgctaccttt
3901 cgagcagact tctttactac actgcactgg attgctatat ttttaaccag aaataaacta
3961 aagattagag caaaaaaaaa aaaaaaa
//