LOCUS BC036520 4888 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens pyridoxal-dependent decarboxylase domain containing 1,
mRNA (cDNA clone MGC:33287 IMAGE:5270048), complete cds.
ACCESSION BC036520
VERSION BC036520.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4888)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4888)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: p Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..4888
/db_xref="H-InvDB:HIT000259084"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33287 IMAGE:5270048"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4888
/gene="PDXDC1"
/gene_synonym="LP8165"
/db_xref="GeneID:23042"
/db_xref="HGNC:HGNC:28995"
CDS 102..1676
/gene="PDXDC1"
/gene_synonym="LP8165"
/codon_start=1
/product="PDXDC1 protein"
/protein_id="AAH36520.1"
/db_xref="GeneID:23042"
/db_xref="HGNC:HGNC:28995"
/translation="MDASLEKIADPTLAEMGKNLKEAVKMLEDSQRRTEEENGKKLIS
GDIPGPLQGSGQDMVSILQLVQNLMHGDEDEEPQSPRIQNIGEQGHMALLGHSLGAYI
STLDKEKLRKLTTRILSDTTLWLCRIFRYENGCAYFHEEEREGLAKICRLAIHSRYED
FVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQLGLPFPCLCRVPCNTVFGSQHQMDV
AFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLAT
LALGYVSSSVLAAAKCDSMTMTPGPWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPTD
KLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKKVNYIKILVEDELSSPVVVF
RFFQELPGSDPVFKAVPVPNMTPSGVGRERHSCDALNRWLGEQLKQLVPASGLTVMDL
EAEGTCLRFSPLMTAAVLGTRGEDVDQLVACIESKLPVLCCTLQLREEFKQEVEATAG
LLYVDDPNWSGIGVVR"
BASE COUNT 1350 a 1060 c 1254 g 1224 t
ORIGIN
1 gagagcgggg acgtcagcgc tgccagcgtg gaaggagctg cggggcgcgg gaggaggaag
61 tagagcccgg gaccgccagg ccaccaccgg ccgcctcagc catggacgcg tccctggaga
121 agatagcaga ccccacgtta gctgaaatgg gaaaaaactt gaaggaggca gtgaagatgc
181 tggaggacag tcagagaaga acagaagagg aaaatggaaa gaagctcata tccggagata
241 ttccaggccc actccagggc agtgggcaag atatggtgag catcctccag ttagttcaga
301 atctcatgca tggagatgaa gatgaggagc cccagagccc cagaatccaa aatattggag
361 aacaaggtca tatggctttg ttgggacata gtctgggagc ttatatttca actctggaca
421 aagagaagct gagaaaactt acaactagga tactttcaga taccacctta tggctatgca
481 gaattttcag atatgaaaat gggtgtgctt atttccacga agaggaaaga gaaggacttg
541 caaagatatg taggcttgcc attcattctc gatatgaaga cttcgtagtg gatggcttca
601 atgtgttata taacaagaag cctgtcatat atcttagtgc tgctgctaga cctggcctgg
661 gccaatacct ttgtaatcag ctcggcttgc ccttcccctg cttgtgccgt gtaccctgta
721 acactgtgtt tggatcccag catcagatgg atgttgcctt cctggagaaa ctgattaaag
781 atgatataga gcgaggaaga ctgcccctgt tgcttgtcgc aaatgcagga acggcagcag
841 taggacacac agacaagatt gggagattga aagaactctg tgagcagtat ggcatatggc
901 ttcatgtgga gggtgtgaat ctggcaacat tggctctggg ttatgtctcc tcatcagtgc
961 tggctgcagc caaatgtgat agcatgacga tgactcctgg cccgtggctg ggtttgccag
1021 ctgttcctgc ggtgacactg tataaacacg atgaccctgc cttgacttta gttgctggtc
1081 ttacatcaaa taagcccaca gacaaactcc gtgccctgcc tctgtggtta tctttacaat
1141 acttgggact tgatgggttt gtggagagga tcaagcatgc ctgtcaactg agtcaacggt
1201 tgcaggaaag tttgaagaaa gtgaattaca tcaaaatctt ggtggaagat gagctcagct
1261 ccccagtggt ggtgttcaga tttttccagg aattaccagg ctcagatccg gtgtttaaag
1321 ccgtcccagt gcccaacatg acaccttcag gagtcggccg ggagaggcac tcgtgtgacg
1381 cgctgaatcg ctggctggga gaacagctga agcagctggt gcctgcaagc ggcctcacag
1441 tcatggatct ggaagctgag ggcacgtgtt tgcggttcag ccctttgatg accgcagcag
1501 ttttaggaac tcggggagag gatgtggatc agctcgtagc ctgcatagaa agcaaactgc
1561 cagtgctgtg ctgtacgctc cagttgcgtg aagagttcaa gcaggaagtg gaagcaacag
1621 caggtctcct atatgttgat gaccctaact ggtctggaat aggggttgtc aggtaaagtc
1681 ttggcctgcc gcttgatgtt ggagactttt ctgtataaag aacatgagtg ggtcattttc
1741 tgaaccacct tagaaatcca agatgaacgt gtagtcacaa tatgcttaac gaaaatgcaa
1801 ctcggttttc tgggcattta caaaagcaca gtgcaagcag gcaatttggc cagcgtggcg
1861 ctcagggagg ggagttgctg aatgttctgt ctgtaggtgc cgactctcag ctacctagga
1921 gaagatgcca acaggtatat atcactcact gagaatggtt actatccagg gcatatagag
1981 aattgcaaat cagtaagaaa aagaacccag ctctcgggga gagaactggg tgcagtccta
2041 tggctgcttt ctcgccttca gaggtgaggc aaacctcttt ttgtattgcc catgagactt
2101 ccagaccttg tatggaacta aagacttagg ctttcagctg ggcacggtgg ctcatgcctg
2161 taatcccagc actttgggag gccaacagga gcatagatga cttgaggcca ggagcttgag
2221 tccagcctgg acaacatggc gaaaccccat ctctagaaaa aatacaaaaa ttagccagag
2281 gtggtggtgc acacctgtag tcccagctac tcgggaagct tagatggaag gatcaactga
2341 gcccaggagg tggaggttgc agtgagccaa gatcatgcca ctgcacccca gcctgggcca
2401 ccaagtgaga ccctgcttta aaaaaaaaaa aaaaaggctt tcctgtgact ttctctttac
2461 tcctggcaca cttccagaaa gtttgtggtc tggagacact cgcagtagct cttttgccca
2521 ctggttccac tgcattgtct tgctaatatt tagaggtttc taatcctgta tcagaagaga
2581 catttgatct tttaagctga aatgctgtgg tttgatgttg ttttaggtat gaacatgcta
2641 atgatgataa gagcagtttg aaatcagatc ccgaagggga aaacatccat gctggactcc
2701 tgaagaagtt aaatgaactg gaatctgacc taacctttaa aataggccct gagtataaga
2761 gcatgaagag ctgcctttat gtcggcatgg cgagcgacaa cgtcgatgct gctgagctcg
2821 tggagaccat tgcggccaca gcccgggaga tagaggagaa ctcgaggctt ctggaaaaca
2881 tgacagaagt ggttcggaaa ggcattcagg aagctcaagt ggagctgcag aaggcaagtg
2941 aagaacggct tctggaagag ggggtgttgc ggcagatccc tgtagtgggc tccgtgctga
3001 attggttttc tccggtccag gctttacaga agggaagaac ttttaacttg acagcaggct
3061 ctctggagtc cacagaaccc atatatgtct acaaagcaca aggtgcagga gtcacgctgc
3121 ctccaacgcc ctcgggcagt cgcaccaagc agaggcttcc aggccagaag ccttttaaaa
3181 ggtccctgcg aggttcagat gctttgagtg agaccagctc agtcagtcac attgaagact
3241 tagaaaaggt ggagcgccta tccagtgggc cggagcagat caccctcgag gccagcagca
3301 ctgagggaca cccaggggct cccagccctc agcacaccga ccagaccgag gccttccaga
3361 aaggggtccc acacccagaa gatgaccact cacaggtaga aggaccggag agcttaagat
3421 gagactcatt gtgtggtttg agactgtact gagtattgtt tcagggaaga tgaagttcta
3481 ttggaaatgt gaactgtgcc acatactaat ataaattact gttgtttgtg cttcactggg
3541 attttggcac aaatatgtgc ctgaaaggta ggctttctag gaggggagtc agcttgtcta
3601 acttcatgta catgtagaac cacgtttgct gtcctactac gacttttccc taagttacca
3661 taaacacatt ttattcacaa aaaacacttc gaatttcaag tgtctaccag tagcaccctt
3721 gctctttcta aacataagcc taagtatatg aggttgcccg tggcaacttt ttggtaaaac
3781 agcttttcat tagcactctc caggttctct gcaacacttc acagaggcga gactggctgt
3841 atcctttgct gtcggtcttt agtacgatca agttgcaata tacagtggga ctgctagact
3901 tgaaggagag cagtgattgt gggattgtaa ataagagcat cagaagccct ccccagctac
3961 tgctcttcgt ggagacttag taaggactgt gtctacttga gctgtggcaa ggctgctgtc
4021 tgggactgtc ctctgccaca aggccatttc tcccattata taccgtttgt aaagagaaac
4081 tgtaaagtct cctcctgacc atatattttt aaatactggc aaagctttta aaattggcac
4141 acaagtacag actgtgctca tttctgttta gtatctgaaa acctgataga tgctaccctt
4201 aagagcttgc tcttccgtgt gctacgtagc accaacctgg ttaaaatctg aaaacaagta
4261 cccctttgac ctgtctccca ctgaagcttc tactgccctg gcagctcgcc tgggcccaac
4321 tcagaaacag gagccagcag agcactctct cacgctgatc cagccgggca ccctgcttaa
4381 gtcagtagaa gctcgctggc actgcccgtt cctacttttc cgaagtactg cgtcactttg
4441 tcgtaagtaa tggcccctgt gccttcttaa tccagcagtc aagcttttgg gagacctgaa
4501 aatgggaaaa ttcacactgg gtttctggac tgtagtattg gaagccttag ttatagtata
4561 ttaagcctat aattatactc tgatttgatg ggatttttga catttacact tgtcaaaatg
4621 cagggggttt tttttggtgc agatgattaa acagtcttcc ctatttggtg caatgaagta
4681 tagcagataa aatgggggag gggtaaatta tcaccttcaa gaaaattaca tgtttttata
4741 tatatttgga attgttaaat tggttttgct gaaacatttc acccttgaga tattatttga
4801 atgttggttt caataaaggt tcttgaaatt gttaaaaaaa aaaaaaaaaa aaaaaaaaaa
4861 aaaaaaaaag aaaaaaaaaa aaaaaaaa
//