LOCUS BC036339 1352 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens chitinase, acidic, mRNA (cDNA clone MGC:34220
IMAGE:5184463), complete cds.
ACCESSION BC036339
VERSION BC036339.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1352)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1352)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: e Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42542397.
FEATURES Location/Qualifiers
source 1..1352
/db_xref="H-InvDB:HIT000094356"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34220 IMAGE:5184463"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1352
/gene="CHIA"
/gene_synonym="AMCase"
/gene_synonym="CHIT2"
/gene_synonym="ECF-L"
/gene_synonym="RP5-1125M8.1"
/gene_synonym="TSA1902"
/db_xref="GeneID:27159"
/db_xref="HGNC:HGNC:17432"
/db_xref="MIM:606080"
CDS 105..1211
/gene="CHIA"
/gene_synonym="AMCase"
/gene_synonym="CHIT2"
/gene_synonym="ECF-L"
/gene_synonym="RP5-1125M8.1"
/gene_synonym="TSA1902"
/codon_start=1
/product="chitinase, acidic"
/protein_id="AAH36339.2"
/db_xref="GeneID:27159"
/db_xref="HGNC:HGNC:17432"
/db_xref="MIM:606080"
/translation="MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDK
HLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVM
TYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYG
HNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPY
AYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLK
KALGLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVAN
NRNAFWHCVNGVTYQQNCQAGLVFDTSCDCCNWA"
BASE COUNT 350 a 373 c 330 g 299 t
ORIGIN
1 ctcacaggtc ttgtccttat actgaatttg cagctcggaa cagccagctg aaaactctcc
61 tggccattgg aggctggaac ttcgggactg cccctttcac tgccatggtt tctactcctg
121 agaaccgcca gactttcatc acctcagtca tcaaattcct gcgccagtat gagtttgacg
181 ggctggactt tgactgggag taccctggct ctcgtgggag ccctcctcag gacaagcatc
241 tcttcactgt cctggtgcag gaaatgcgtg aagcttttga gcaggaggcc aagcagatca
301 acaagcccag gctgatggtc actgctgcag tagctgctgg catctccaat atccagtctg
361 gctatgagat cccccaactg tcacagtacc tggactacat ccatgtcatg acctacgacc
421 tccatggctc ctgggagggc tacactggag agaacagccc cctctacaaa tacccgactg
481 acaccggcag caacgcctac ctcaatgtgg attatgtcat gaactactgg aaggacaatg
541 gagcaccagc tgagaagctc atcgttggat tccctaccta tggacacaac ttcatcctga
601 gcaacccctc caacactgga attggtgccc ccacctctgg tgctggtcct gctgggccct
661 atgccaagga gtctgggatc tgggcttact acgagatctg taccttcctg aaaaatggag
721 ccactcaggg atgggatgcc cctcaggaag tgccttatgc ctatcagggc aatgtgtggg
781 ttggctatga caacatcaag agcttcgata ttaaggctca atggcttaag cacaacaaat
841 ttggaggcgc catggtctgg gccattgatc tggatgactt cactggcact ttctgcaacc
901 agggcaagtt tcccctaatc tccaccctga agaaggccct cggcctgcag agtgcaagtt
961 gcacggctcc agctcagccc attgagccaa taactgctgc tcccagtggc agcgggaacg
1021 ggagcgggag tagcagctct ggaggcagct cgggaggcag tggattctgt gctgtcagag
1081 ccaacggcct ctaccccgtg gcaaataaca gaaatgcctt ctggcactgc gtgaatggag
1141 tcacgtacca gcagaactgc caggccgggc ttgtcttcga caccagctgt gattgctgca
1201 actgggcata aacctgacct ggtctatatt ccctagagtt ccagtctctt ttgcttagga
1261 catgttgccc ctacctaaag tcctgcaata aaatcagcag tcaaaacatg aaaaaaaaaa
1321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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