LOCUS BC036298 2062 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens serpin peptidase inhibitor, clade H (heat shock
protein 47), member 1, (collagen binding protein 1), mRNA (cDNA
clone MGC:25195 IMAGE:4748644), complete cds.
ACCESSION BC036298
VERSION BC036298.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2062)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2062)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Cleaver, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: j Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32454740.
FEATURES Location/Qualifiers
source 1..2062
/db_xref="H-InvDB:HIT000094339"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:25195 IMAGE:4748644"
/tissue_type="Skin, squamous cell carcinoma"
/clone_lib="NCI_CGAP_Skn4"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..2062
/gene="SERPINH1"
/gene_synonym="AsTP3"
/gene_synonym="gp46"
/gene_synonym="HSP47"
/gene_synonym="PIG14"
/gene_synonym="RA-A47"
/db_xref="GeneID:871"
/db_xref="HGNC:HGNC:1546"
/db_xref="MIM:600943"
CDS 79..1335
/gene="SERPINH1"
/gene_synonym="AsTP3"
/gene_synonym="gp46"
/gene_synonym="HSP47"
/gene_synonym="PIG14"
/gene_synonym="RA-A47"
/codon_start=1
/product="serpin peptidase inhibitor, clade H (heat shock
protein 47), member 1, (collagen binding protein 1)"
/protein_id="AAH36298.2"
/db_xref="GeneID:871"
/db_xref="HGNC:HGNC:1546"
/db_xref="MIM:600943"
/translation="MRSLLLLSAFCLLEAALAAEVKKPAAAAAPGTAEKLSPKAATLA
ERSAGLAFSLYQAMAKDQAVENILVSPVVVASSLGLVSLGGKATTASQAKAVLSAEQL
RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNCEHSK
INFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHHKM
VDNRGFMVTRSYTVGVMMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIILMPHHVE
PLERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNK
ADLSRMSGKKDLYLASVFHATAFELDTDGNPFDQDIYGREELRSPKLFYADHPFIFLV
RDTQSGSLLFIGRLVRPKGDKMRDEL"
BASE COUNT 472 a 610 c 592 g 388 t
ORIGIN
1 cgagagcgag agtcacgtcc cggcgctagc ccagcccgac ccaggcccac cgtggtgcac
61 gcaaaccact tcctggccat gcgctccctc ctgcttctca gcgccttctg cctcctggag
121 gcggccctgg ccgccgaggt gaagaaacct gcagccgcag cagctcctgg cactgcggag
181 aagttgagcc ccaaggcggc cacgcttgcc gagcgcagcg ccggcctggc cttcagcttg
241 taccaggcca tggccaagga ccaggcagtg gagaacatcc tggtgtcacc cgtggtggtg
301 gcctcgtcgc tggggctcgt gtcgctgggc ggcaaggcga ccacggcgtc gcaggccaag
361 gcagtgctga gcgccgagca gctgcgcgac gaggaggtgc acgccggcct gggcgagctg
421 ctgcgctcac tcagcaactc cacggcgcgc aacgtgacct ggaagctggg cagccgactg
481 tacggaccca gctcagtgag cttcgctgat gacttcgtgc gcagcagcaa gcagcactac
541 aactgcgagc actccaagat caacttccgc gacaagcgca gcgcgctgca gtccatcaac
601 gagtgggccg cgcagaccac cgacggcaag ctgcccgagg tcaccaagga cgtggagcgc
661 acggacggcg ccctgttagt caacgccatg ttcttcaagc cacactggga tgagaaattc
721 caccacaaga tggtggacaa ccgtggcttc atggtgactc ggtcctatac cgtgggtgtc
781 atgatgatgc accggacagg cctctacaac tactacgacg acgagaagga aaagctgcaa
841 atcgtggaga tgcccctggc ccacaagctc tccagcctca tcatcctcat gccccatcac
901 gtggagcctc tcgagcgcct tgaaaagctg ctaaccaaag agcagctgaa gatctggatg
961 gggaagatgc agaagaaggc tgttgccatc tccttgccca agggtgtggt ggaggtgacc
1021 catgacctgc agaaacacct ggctgggctg ggcctgactg aggccattga caagaacaag
1081 gccgacttgt cacgcatgtc aggcaagaag gacctgtacc tggccagcgt gttccacgcc
1141 accgcctttg agttggacac agatggcaac ccctttgacc aggacatcta cgggcgcgag
1201 gagctgcgca gccccaagct gttctacgcc gaccacccct tcatcttcct agtgcgggac
1261 acccaaagcg gctccctgct attcattggg cgcctggtcc ggcctaaggg tgacaagatg
1321 cgagacgagt tatagggcct cagggtgcac acaggatggc aggaggcatc caaaggctcc
1381 tgagacacat gggtgctatt ggggttgggg gggaggtgag gtaccagcct tggatactcc
1441 atggggtggg ggtggaaaag cagaccgggg ttcccgtgtg cctgagcgga ccttcccagc
1501 tagaattcac tccacttgga catgggcccc agataccatg atgctgagcc cggaaactcc
1561 acatcctgtg ggacctgggc catagtcatt ctgcctgccc tgaaagtccc agatcaagcc
1621 tgcctcaatc agtattcata tttatagcca ggtaccttct cacctgtgag accaaattga
1681 gctagggggg tcagccagcc ctcttctgac actaaaacac ctcagctgcc tccccagctc
1741 tatcccaacc tctcccaact ataaaactag gtgctgcagc ccctgggacc aggcaccccc
1801 agaatgacct ggccgcagtg aggcggattg agaaggagct cccaggaggg gcttctgggc
1861 agactctggt caagaagcat cgtgtctggc gttgtgggga tgaacttttt gttttgtttc
1921 ttcctttttt agttcttcaa agatagggag ggaaggggga acatgagcct ttgttgctat
1981 caatccaaga acttatttgt acattttttt tttcaataaa acttttccaa tgacaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aa
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