LOCUS BC036109 2796 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SECIS binding protein 2, mRNA (cDNA clone MGC:33935
IMAGE:5296292), complete cds.
ACCESSION BC036109
VERSION BC036109.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2796)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2796)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2796
/db_xref="H-InvDB:HIT000051631"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33935 IMAGE:5296292"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2796
/gene="SECISBP2"
/gene_synonym="SBP2"
/db_xref="GeneID:79048"
/db_xref="HGNC:HGNC:30972"
/db_xref="MIM:607693"
CDS 67..2631
/gene="SECISBP2"
/gene_synonym="SBP2"
/codon_start=1
/product="SECIS binding protein 2"
/protein_id="AAH36109.1"
/db_xref="GeneID:79048"
/db_xref="HGNC:HGNC:30972"
/db_xref="MIM:607693"
/translation="MASEGPREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFP
SSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQN
VYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQEMKALFKKKTYDEKKTYDQQKFD
SERADGTISSEIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEF
TTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNP
NESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADP
KNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQNEASRKNKKKKEKSTSKY
EVLTVQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQL
DLGGMLTALEKKQHSQHAKQSSKPVVVSVGAVPVLSKECASGERGRRMSQMKTPHNPL
DSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVGPAFTSDDTQDGES
GGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKI
HSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLK
HLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNK
AVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPT
QGPSCPAEDGPPALKEKEEPHYIEIWKKHLEAYSGCTLELEESLEASTSQMMNLNL"
BASE COUNT 864 a 649 c 651 g 632 t
ORIGIN
1 ggctgtccgg caagccgacg gcccgctgct ggcctccgtg acgcggcctc ctccgcgcct
61 cgcggcatgg cgtcggaggg gccgcgggag cccgaaagcg agggcatcaa gttatcagca
121 gatgtcaaac catttgtccc cagatttgcc gggctcaatg tggcatggtt agagtcctca
181 gaagcatgtg tcttccccag ctctgcagcc acatactatc cgtttgttca ggaaccacca
241 gtgacagagc agaaaatata tactgaagac atggcctttg gagcttcaac ttttccacct
301 cagtatttat cttctgagat aactcttcat ccatatgcct attctcctta tacccttgac
361 tccacacaga atgtttactc agtgcctggc tcccagtatc tttataacca acccagttgt
421 taccgaggtt ttcaaacagt gaagcatcga aatgagaaca catgccctct cccacaagaa
481 atgaaagctc tgtttaagaa gaaaacctat gatgagaaaa aaacgtatga tcagcaaaag
541 tttgacagtg aaagggctga tggaactata tcatctgaga taaaatcagc tagaggttca
601 catcatttgt ccatttacgc tgagaatagt ttgaaatcag atggttacca taagcgaaca
661 gacaggaaat ccagaatcat tgcaaaaaat gtatctacct ccaaacctga gtttgaattt
721 accacactgg actttcctga actgcaaggt gcagagaaca atatgtcaga gatacagaag
781 caacccaagt ggggacctgt ccactctgtc tctaccgaca tttctcttct aagagaagta
841 gtaaaaccag ctgcagtgtt atcaaagggt gaaatagtgg tgaaaaataa cccaaatgaa
901 tctgtaactg ctaatgccgc taccaattct ccttcatgta caagagagtt atcttggaca
961 ccaatgggtt atgttgttcg acagacatta tctacagaac tgtcagcagc ccctaaaaat
1021 gttacttcta tgataaactt aaagaccatt gcttcatcag cagatcctaa aaatgttagt
1081 ataccatctt ctgaagcttt atcttcggat ccttcctaca acaaagaaaa acacattatt
1141 catcctaccc aaaagtctaa agcatcacaa ggtagtgacc ttgaacaaaa tgaagcctca
1201 agaaagaata agaaaaagaa agaaaaatct acatcaaaat atgaagtcct gacagttcaa
1261 gagcctccaa ggattgaaga tgccgaggaa tttcccaacc tggcagttgc atctgaaaga
1321 agagacagaa tagagacacc gaaatttcaa tctaagcagc agccacagga taattttaaa
1381 aataatgtaa agaagagcca gcttccagtg cagttggact tggggggcat gctgacagcc
1441 ctggagaaga agcagcactc tcagcatgca aagcagtcct ccaaaccagt ggtagtctca
1501 gttggagcag tgccagtcct ttccaaagaa tgtgcatcag gggagagagg ccgccgcatg
1561 agtcaaatga agaccccgca caatcccttg gactccagcg ccccactgat gaagaaaggg
1621 aagcagaggg agatccccaa ggccaagaag ccaacctcac tgaagaagat tattttgaaa
1681 gaacggcaag agagaaagca gcgtctccaa gaaaatgctg tgggtccagc ttttaccagt
1741 gatgacacac aagatggaga gagtggtggt gatgaccagt ttcccgagca ggcagagctg
1801 tcagggccag aggggatgga cgaactgatc tccactcctt cggttgagga caagtctgaa
1861 gagccaccag gcacagagct ccagagggac acagaggcct cccaccttgc tcccaatcac
1921 accaccttcc ctaagatcca cagccgcaga ttcagggatt actgcagcca gatgcttagt
1981 aaagaagtgg atgcttgtgt taccgaccta ctcaaagaac tggtccgttt ccaagaccgt
2041 atgtaccaga aagatccagt caaggccaag actaaacgtc gacttgtgtt ggggttgagg
2101 gaggttctca aacacctgaa gctcaaaaaa ctgaaatgtg tcattatttc tcccaactgt
2161 gagaagatac agtcaaaagg tgggctggat gacactttgc acacaattat tgattatgcc
2221 tgtgagcaga acattccctt tgtgtttgct ctcaaccgca aagctctggg gcgcagtttg
2281 aataaggcag ttcctgtcag tgtggtgggg atcttcagct atgatggggc ccaggatcag
2341 ttccacaaga tggttgagct gacagtggcg gcccgacagg cgtacaagac catgctggag
2401 aatgtgcagc aggagctggt gggagagccc aggcctcagg cacctcccag cctacccaca
2461 cagggcccca gctgccctgc agaagatggc cccccagccc tgaaagaaaa agaagagcca
2521 cactacattg aaatctggaa aaaacatctg gaagcataca gtggatgtac cctggagcta
2581 gaagaatcct tggaggcttc aacctctcaa atgatgaatt tgaatttatg agagttcttg
2641 cctgtgtgtc tgtattttgg gtaaggaggg gaggtctgaa aaagactttg gggctttttc
2701 ttctgttttt catgacaatg taatttgtgt aactgttgaa tctggaaatt gatcagcatt
2761 aaagggcaca tgaagcagcg aaaaaaaaaa aaaaaa
//