LOCUS BC036099 2948 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens aryl-hydrocarbon receptor nuclear translocator 2, mRNA
(cDNA clone MGC:33872 IMAGE:5275941), complete cds.
ACCESSION BC036099
VERSION BC036099.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2948)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2948)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: g Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2948
/db_xref="H-InvDB:HIT000051626"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33872 IMAGE:5275941"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2948
/gene="ARNT2"
/gene_synonym="KIAA0307"
/db_xref="GeneID:9915"
/db_xref="MIM:606036"
CDS 116..2266
/gene="ARNT2"
/gene_synonym="KIAA0307"
/codon_start=1
/product="ARNT2 protein"
/protein_id="AAH36099.1"
/db_xref="GeneID:9915"
/db_xref="MIM:606036"
/translation="MATPAAVNPPEMASDIPGSVTLPVAPMAATGQVRMAGAMPARGG
KRRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDK
LTILRMAVSHMKSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRV
IYVSDSVTPVLNQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTV
KKEGQQSSMRMCMGSRRSFICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQ
YAVVHCTGYIKAWPPAGMTIPEEDADVGQGSKYCLVAIGRLQVTSSPVCMDMNGMSVP
TEFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKL
KGQVLSVMYRFRTKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNVKQLQQQQAELEV
HQRDGLSSYDLSQVPVPNLPAGVHEAGKSVEKADAIFSQERDPRFAEMFAGISASEKK
MMSSASAAGTQQIYSQGSPFPSGHSGKAFSSSVVHVPGVNDIQSSSSTGQNMSQISRQ
LNQSQVAWTGSRPPFPGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP
SGNAYSSLANRTPGFAESGQSSGQFQGRPSEVWSQWQSQHHGQQSGEQHSHQQPGQTE
VFQDMLPMPGDPGNEWWSPHSRQHFRQPISYARM"
BASE COUNT 754 a 778 c 779 g 637 t
ORIGIN
1 ctttgtgtgg cggcggcggc gcctgggcct gaccgggtcc ccggggctga gcgccgggct
61 ccgcgccgcc cctcccgcgc ccctgccaag cgggcgccta tcctctccga gcaagatggc
121 aaccccggcg gcggtcaacc ctccggaaat ggcttcagac atacctggat ctgtgacgtt
181 gcccgttgcc cccatggcgg ccaccggaca ggtgaggatg gcgggggcca tgcctgcccg
241 tggaggaaag cggcgttccg gaatggactt cgatgatgaa gatggtgaag gccccagtaa
301 attttcaaga gagaatcata gtgaaatcga aaggcgcaga cggaacaaga tgactcagta
361 catcacggag ctctccgaca tggtccccac atgcagcgca ctggctcgga agccagacaa
421 gctcaccatc ctccgcatgg ccgtctcgca catgaagtcc atgaggggta cagggaacaa
481 gtccaccgat ggcgcgtaca agccttcctt cctcacagag caggaactga agcatctcat
541 ccttgaagca gctgatggat ttctgtttgt ggtggctgct gagacagggc gagtgattta
601 tgtgtctgac tccgtcaccc ctgttctgaa ccagccccag tcagagtggt ttgggagcac
661 actgtatgaa caggtgcatc ctgatgacgt ggagaagctg agagagcaac tgtgcacctc
721 agaaaactca atgacaggcc ggatcttgga cctgaagact gggacggtca agaaagaagg
781 gcagcagtca tccatgagga tgtgcatggg ctcgcggcgg tctttcatct gcaggatgag
841 gtgtggaaat gctcctttgg accaccttcc tctaaacaga ataaccacca tgaggaaaag
901 gttcaggaat ggccttggcc ctgtgaaaga aggagaagcc caatatgctg tggtccactg
961 tacaggatac atcaaggcct ggccaccagc aggaatgacc atacctgaag aagacgctga
1021 tgtgggacaa ggcagtaaat attgcctcgt ggcaattggg agactccagg tgaccagctc
1081 tcctgtatgc atggacatga atgggatgtc ggtgcccaca gagttcttat cccggcataa
1141 ctccgatgga atcatcacat ttgtggatcc aagatgtatc agtgtgattg gctaccaacc
1201 gcaggatctt ctgggaaagg acattttgga attctgccac cctgaggatc aaagccatct
1261 gcgtgagagc ttccagcagg tggttaagct gaaaggccaa gtcctgtcgg tcatgtatcg
1321 atttcgcacc aagaaccggg agtggatgtt gatccgcacc agcagcttca cattccagaa
1381 tccctattct gatgagattg agtacatcat ctgcaccaac accaacgtca agcaacttca
1441 gcaacagcag gcagaattgg aagtgcacca gagagatgga ttgtcatcgt atgacttatc
1501 ccaggtcccc gtccccaacc taccagccgg tgttcatgag gccgggaagt ccgtggaaaa
1561 ggcggatgca atcttctccc aggaaagaga tcctcggttt gctgaaatgt ttgcaggaat
1621 tagtgcatcg gagaagaaga tgatgagctc agcctctgca gcaggaaccc agcagatcta
1681 ctcccaagga agcccatttc cctctggaca ctccgggaag gccttcagct cttcagtggt
1741 tcatgtgcct ggagtgaatg atattcagtc ctcttcttcc acgggccaga acatgtccca
1801 aatctcccgg cagctaaacc agagtcaggt ggcatggaca gggagtcgtc cgccctttcc
1861 gggacagcaa atcccatctc agtccagcaa gactcagtca tctccctttg ggattggaac
1921 gagccacacc tacccggcag acccctcttc ctacagcccc ctctccagcc cagctacctc
1981 ctcgccaagt gggaatgcct actccagtct tgccaacagg actccagggt tcgctgaaag
2041 tggacaaagt agcgggcagt tccaagggcg gccctcggaa gtctggtcgc agtggcaaag
2101 ccagcaccat ggccagcaga gcggtgagca gcactcccac cagcagcccg gtcagactga
2161 agtgttccag gacatgctgc ccatgccagg agatccaggg aatgaatggt ggtctcccca
2221 ctcccggcag cactttaggc agcccataag ctatgcgaga atgtgaacgc tcaccttgct
2281 ccgtcacggt tctgacctac cacataaaca ggaagaagcc agtgaccgga acagctctag
2341 gaataacaag tcagaataga agtgtccttt atattaccag aaaatatggg cttggcctaa
2401 gtcgctgtct cctaacctgc cggggtcatt ccccaccaaa caccccatac taaggagcca
2461 tgagccacct ggacattcac cttttctttg accatctgga gtctggggca acttaaggag
2521 gcaccacaca gtggtgcagg cacatttcca agcgtaggtg tccctggctt ttgtggccaa
2581 agctagtgtt atggtcaaca acaggccagg gtctgtgggg cactgacctt gaaagtggca
2641 aaatggaggt ttcacaggct gtgcgggagc aggacggctt gcttcatcta acaatctcag
2701 tttcctttaa aaaaagaaag aaaggaaaag atttcataag caggtgtcag tggacagttt
2761 aagtacttaa ccatttctct ttcttcttat ggatgtgaac tgtgctgtgg ataaatcatt
2821 tgtatttctt gaatgttctc tatgactaac agttattaag tcggttgtgt atatgtgtaa
2881 ctaatgtaac tgccttttaa aatttcatta caataaaaat gactttgctc tgaaaaaaaa
2941 aaaaaaaa
//