LOCUS BC036062 3486 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens protocadherin beta 16, mRNA (cDNA clone MGC:33674 IMAGE:5303291), complete cds. ACCESSION BC036062 VERSION BC036062.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3486) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3486) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: o Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 14195604. FEATURES Location/Qualifiers source 1..3486 /db_xref="H-InvDB:HIT000051607" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33674 IMAGE:5303291" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3486 /gene="PCDHB16" /gene_synonym="KIAA1621" /gene_synonym="ME1" /gene_synonym="PCDH-BETA16" /gene_synonym="PCDH3X" /gene_synonym="PCDHB8a" /db_xref="GeneID:57717" /db_xref="HGNC:HGNC:14546" /db_xref="MIM:606345" CDS 150..2480 /gene="PCDHB16" /gene_synonym="KIAA1621" /gene_synonym="ME1" /gene_synonym="PCDH-BETA16" /gene_synonym="PCDH3X" /gene_synonym="PCDHB8a" /codon_start=1 /product="protocadherin beta 16" /protein_id="AAH36062.1" /db_xref="GeneID:57717" /db_xref="HGNC:HGNC:14546" /db_xref="MIM:606345" /translation="MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSF VANLGKDLGLGLTEMSTRKARIISQGNKQHLQLKAQTGDLLINEKLDREELCGPTEPC ILHFQVLMENPLEIFQAELRVIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDL DVGSNNVQNYKISPSSHFRVLIHEFRDGRKYPELVLDKELDREEEPQLRLTLTALDGG SPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGK ISYTLFQPSEDISKTLEVNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLL LQVVDVNDNPPQVTMSALTSPIAENSPEIVVAVFSVSDPDSGNNGKTISSIQEDLPFL LKPSVKNFYTLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPT FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINA DNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVLVLDANDNSPLVLYPLQ NGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV RTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPFLPLPEAAPGQTQ ANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSMPEGPFPGRLVDVS GTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNFSP" BASE COUNT 862 a 886 c 827 g 911 t ORIGIN 1 agatagctga gcgagagcga acgtgagtgt gaaacctctt taagacaccg ttgggctgct 61 tggttctgac attctggact gcaaaacagt tctactagga tcctggggat acatgaagct 121 tctgtgaacc aacttttcaa gaaaaagcaa tggagattgg atggatgcac aatcggagac 181 aaaggcaagt ccttgttttc tttgttttgc tgagcttgtc tggggcgggc gccgagttgg 241 ggtcctattc cgtagtggaa gaaacggaga gaggctcttt tgtggcaaat ctaggaaaag 301 acctggggtt ggggttgaca gagatgtcca cccgcaaggc caggatcatt tcccagggga 361 acaaacagca tttgcagctc aaggctcaaa ctggggattt gctcataaat gagaagctag 421 atcgagagga gctatgcggt cccactgagc cttgcatact acatttccaa gtgttaatgg 481 aaaacccttt agaaatattt caggctgaac tgagggtgat agatataaat gaccattctc 541 ccatgttcac tgaaaaggaa atgattctaa aaataccgga aaacagtcct ctaggaactg 601 agttccctct gaatcatgct ttggacttgg acgtaggaag caataatgtt caaaactata 661 aaatcagccc aagctctcat ttccgggttc taatccatga attcagagat ggcaggaaat 721 accctgagct agtgttggat aaagagctgg atcgggagga ggagcctcaa ctaagattaa 781 ccctgacagc gctggatggt ggctctccac cgcgatctgg aactgctcag gtccgtattg 841 aagtggtgga catcaatgat aacgctcctg agtttgagca gcccatctac aaagtgcaga 901 ttccagagaa cagtcctctt ggctccctgg ttgccaccgt ctccgccagg gatttagacg 961 gcggagccaa tggaaaaata tcatacacac tctttcagcc ttcggaggat attagtaaaa 1021 ctttggaggt aaatcctatg acaggggaag ttcgactgag aaagcaagta gatttcgaaa 1081 tggttacgtc ttatgaagtg cgcatcaaag ccacagatgg gggaggtctt tcaggaaagt 1141 gcactcttct cctgcaggtg gtggacgtga atgacaatcc cccacaggtg accatgtctg 1201 cactcaccag ccccatcgca gagaactcgc ctgagatagt agttgctgtt ttcagcgttt 1261 cagatcctga ctccggaaac aatgggaaga cgatttcctc catccaggaa gaccttccct 1321 ttcttctaaa accttcagtc aagaactttt acaccttggt aacggagaga gcactcgaca 1381 gagaagcaag agctgaatat aatatcaccc tcaccgtcac agatatgggg actccaaggc 1441 tgaaaacgga gcacaacata acagtgcaga tatcagatgt caatgataac gcccccactt 1501 tcacccaaac ctcctacacc ctgttcgtcc gcgagaacaa cagccccgcc ctgcacatcg 1561 gcagcgtcag cgccacagac agagactcgg gcaccaacgc ccaggtcacc tactcgctgc 1621 tgccgcccca agacccgcac ctgcccctcg cctccctggt ctccatcaac gcggacaacg 1681 gccacctgtt cgccctcagg tcgctggact acgaggccct gcaggctttc gagttccgcg 1741 tgggcgccac agaccgcggc tcccccgcgc tgagcagaga ggcgctggtg cgcgtgctgg 1801 tgctggacgc caacgacaac tcgcccttag tgctgtaccc gctgcagaac ggctccgcgc 1861 cctgcactga gctggtgccc cgggcggccg agccgggcta cctggtgacc aaggtggtgg 1921 cggtggacgg cgactcgggc cagaatgcct ggctgtcgta ccagctgctc aaggccacgg 1981 agcccgggct gttcggtgtg tgggcgcaca atggcgaggt gcgcaccgcc aggctgctga 2041 gcgagcgcga cgcagccaag cagaggctgg tggtgctggt caaggacaat ggcgagcctc 2101 cgcgctcggc caccgccacg ctgcacgtgc tcctggtgga cggcttctcc cagcccttcc 2161 tgccgctccc agaggcggcc cccggccaga cccaggccaa ctcgctcact gtctacctgg 2221 tggtggcgtt ggcctcggtg tcgtcgctct tcctcttttc ggtgctcctg ttcgtggcgg 2281 tgcggctgtg caggaggagc agggcggcct cggtgggccg ctgctcgatg cctgagggcc 2341 cctttccagg gcgtctggtg gacgtaagcg gcaccgggac cctgtcccag agctaccaat 2401 acgaggtgtg tctgacagga ggctcagaaa caagtgagtt caagttcctg aagccgatta 2461 tccccaactt ctctccttag ggcactagga aagaaataga ttaaaattcc acccttcaca 2521 atagctttgg atttaattat tgataggaac ccatttgata aattccttaa cttcttatga 2581 ttgtcttgtt gattaaattg ttcatgctca ccacaccaat aaggtatttt tctctgattg 2641 ttagttcaaa ttatattgtt aattccagtt tcccttttcc tcatatttac cccgaagagg 2701 tgttgcatat agaatcccaa ttaacaaaat atactttatc ttcaaagttg atgtcattta 2761 aaatttttcc gtctttatat tttatttact tcctattcat tttttgctcc atttttcatg 2821 ttacttctca gtttcctaga acttcaagta ttaaaataac ctgttgcatg tattaggcat 2881 atttcctatg ttacatttct tttgtctatt ttcctttcaa aattggtatt tttgttgggc 2941 tcaattttca ttataatact tttcttaaag tttctttctt tcttttcttt tctttctttt 3001 tttttttttc ctttttgaga cagggtctta ctcttgtcac ccaggctgga gtgcagtggt 3061 acaatcttgg ctcactgcaa cctctgcctc ctgggcccaa cggatccttc cacctcagcc 3121 tcccaagtag cttggactat aggtgcatgc caccatgcct ggctaatctt ttgcagcgat 3181 gggattttgc caagttgccc aggctgatct tgaactcctg ggctcaagcc atcctccctc 3241 ctcagcctcc caaaattctg ggattacagg cataagccaa tgtgcccatc caaagtttta 3301 tttatttatt tttttgagat ggagtctcgt aaagttacct ttaaaaaaaa agttctattt 3361 tccctgtatt ggtatctcct taaataaaat aaaatattcc tattgtaagt gatatgagaa 3421 atctttaacc agccttatct aaaaataaaa agagaagcca ttgtaagaca aaaaaaaaaa 3481 aaaaaa //