LOCUS       BC036062                3486 bp    mRNA    linear   HUM 17-JUL-2006
DEFINITION  Homo sapiens protocadherin beta 16, mRNA (cDNA clone MGC:33674
            IMAGE:5303291), complete cds.
ACCESSION   BC036062
VERSION     BC036062.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3486)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3486)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 48 Row: o Column: 24
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 14195604.
FEATURES             Location/Qualifiers
     source          1..3486
                     /db_xref="H-InvDB:HIT000051607"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:33674 IMAGE:5303291"
                     /tissue_type="Brain, hypothalamus"
                     /clone_lib="NIH_MGC_96"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..3486
                     /gene="PCDHB16"
                     /gene_synonym="KIAA1621"
                     /gene_synonym="ME1"
                     /gene_synonym="PCDH-BETA16"
                     /gene_synonym="PCDH3X"
                     /gene_synonym="PCDHB8a"
                     /db_xref="GeneID:57717"
                     /db_xref="HGNC:HGNC:14546"
                     /db_xref="MIM:606345"
     CDS             150..2480
                     /gene="PCDHB16"
                     /gene_synonym="KIAA1621"
                     /gene_synonym="ME1"
                     /gene_synonym="PCDH-BETA16"
                     /gene_synonym="PCDH3X"
                     /gene_synonym="PCDHB8a"
                     /codon_start=1
                     /product="protocadherin beta 16"
                     /protein_id="AAH36062.1"
                     /db_xref="GeneID:57717"
                     /db_xref="HGNC:HGNC:14546"
                     /db_xref="MIM:606345"
                     /translation="MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSF
                     VANLGKDLGLGLTEMSTRKARIISQGNKQHLQLKAQTGDLLINEKLDREELCGPTEPC
                     ILHFQVLMENPLEIFQAELRVIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDL
                     DVGSNNVQNYKISPSSHFRVLIHEFRDGRKYPELVLDKELDREEEPQLRLTLTALDGG
                     SPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGK
                     ISYTLFQPSEDISKTLEVNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLL
                     LQVVDVNDNPPQVTMSALTSPIAENSPEIVVAVFSVSDPDSGNNGKTISSIQEDLPFL
                     LKPSVKNFYTLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPT
                     FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINA
                     DNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVLVLDANDNSPLVLYPLQ
                     NGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV
                     RTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPFLPLPEAAPGQTQ
                     ANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSMPEGPFPGRLVDVS
                     GTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNFSP"
BASE COUNT          862 a          886 c          827 g          911 t
ORIGIN      
        1 agatagctga gcgagagcga acgtgagtgt gaaacctctt taagacaccg ttgggctgct
       61 tggttctgac attctggact gcaaaacagt tctactagga tcctggggat acatgaagct
      121 tctgtgaacc aacttttcaa gaaaaagcaa tggagattgg atggatgcac aatcggagac
      181 aaaggcaagt ccttgttttc tttgttttgc tgagcttgtc tggggcgggc gccgagttgg
      241 ggtcctattc cgtagtggaa gaaacggaga gaggctcttt tgtggcaaat ctaggaaaag
      301 acctggggtt ggggttgaca gagatgtcca cccgcaaggc caggatcatt tcccagggga
      361 acaaacagca tttgcagctc aaggctcaaa ctggggattt gctcataaat gagaagctag
      421 atcgagagga gctatgcggt cccactgagc cttgcatact acatttccaa gtgttaatgg
      481 aaaacccttt agaaatattt caggctgaac tgagggtgat agatataaat gaccattctc
      541 ccatgttcac tgaaaaggaa atgattctaa aaataccgga aaacagtcct ctaggaactg
      601 agttccctct gaatcatgct ttggacttgg acgtaggaag caataatgtt caaaactata
      661 aaatcagccc aagctctcat ttccgggttc taatccatga attcagagat ggcaggaaat
      721 accctgagct agtgttggat aaagagctgg atcgggagga ggagcctcaa ctaagattaa
      781 ccctgacagc gctggatggt ggctctccac cgcgatctgg aactgctcag gtccgtattg
      841 aagtggtgga catcaatgat aacgctcctg agtttgagca gcccatctac aaagtgcaga
      901 ttccagagaa cagtcctctt ggctccctgg ttgccaccgt ctccgccagg gatttagacg
      961 gcggagccaa tggaaaaata tcatacacac tctttcagcc ttcggaggat attagtaaaa
     1021 ctttggaggt aaatcctatg acaggggaag ttcgactgag aaagcaagta gatttcgaaa
     1081 tggttacgtc ttatgaagtg cgcatcaaag ccacagatgg gggaggtctt tcaggaaagt
     1141 gcactcttct cctgcaggtg gtggacgtga atgacaatcc cccacaggtg accatgtctg
     1201 cactcaccag ccccatcgca gagaactcgc ctgagatagt agttgctgtt ttcagcgttt
     1261 cagatcctga ctccggaaac aatgggaaga cgatttcctc catccaggaa gaccttccct
     1321 ttcttctaaa accttcagtc aagaactttt acaccttggt aacggagaga gcactcgaca
     1381 gagaagcaag agctgaatat aatatcaccc tcaccgtcac agatatgggg actccaaggc
     1441 tgaaaacgga gcacaacata acagtgcaga tatcagatgt caatgataac gcccccactt
     1501 tcacccaaac ctcctacacc ctgttcgtcc gcgagaacaa cagccccgcc ctgcacatcg
     1561 gcagcgtcag cgccacagac agagactcgg gcaccaacgc ccaggtcacc tactcgctgc
     1621 tgccgcccca agacccgcac ctgcccctcg cctccctggt ctccatcaac gcggacaacg
     1681 gccacctgtt cgccctcagg tcgctggact acgaggccct gcaggctttc gagttccgcg
     1741 tgggcgccac agaccgcggc tcccccgcgc tgagcagaga ggcgctggtg cgcgtgctgg
     1801 tgctggacgc caacgacaac tcgcccttag tgctgtaccc gctgcagaac ggctccgcgc
     1861 cctgcactga gctggtgccc cgggcggccg agccgggcta cctggtgacc aaggtggtgg
     1921 cggtggacgg cgactcgggc cagaatgcct ggctgtcgta ccagctgctc aaggccacgg
     1981 agcccgggct gttcggtgtg tgggcgcaca atggcgaggt gcgcaccgcc aggctgctga
     2041 gcgagcgcga cgcagccaag cagaggctgg tggtgctggt caaggacaat ggcgagcctc
     2101 cgcgctcggc caccgccacg ctgcacgtgc tcctggtgga cggcttctcc cagcccttcc
     2161 tgccgctccc agaggcggcc cccggccaga cccaggccaa ctcgctcact gtctacctgg
     2221 tggtggcgtt ggcctcggtg tcgtcgctct tcctcttttc ggtgctcctg ttcgtggcgg
     2281 tgcggctgtg caggaggagc agggcggcct cggtgggccg ctgctcgatg cctgagggcc
     2341 cctttccagg gcgtctggtg gacgtaagcg gcaccgggac cctgtcccag agctaccaat
     2401 acgaggtgtg tctgacagga ggctcagaaa caagtgagtt caagttcctg aagccgatta
     2461 tccccaactt ctctccttag ggcactagga aagaaataga ttaaaattcc acccttcaca
     2521 atagctttgg atttaattat tgataggaac ccatttgata aattccttaa cttcttatga
     2581 ttgtcttgtt gattaaattg ttcatgctca ccacaccaat aaggtatttt tctctgattg
     2641 ttagttcaaa ttatattgtt aattccagtt tcccttttcc tcatatttac cccgaagagg
     2701 tgttgcatat agaatcccaa ttaacaaaat atactttatc ttcaaagttg atgtcattta
     2761 aaatttttcc gtctttatat tttatttact tcctattcat tttttgctcc atttttcatg
     2821 ttacttctca gtttcctaga acttcaagta ttaaaataac ctgttgcatg tattaggcat
     2881 atttcctatg ttacatttct tttgtctatt ttcctttcaa aattggtatt tttgttgggc
     2941 tcaattttca ttataatact tttcttaaag tttctttctt tcttttcttt tctttctttt
     3001 tttttttttc ctttttgaga cagggtctta ctcttgtcac ccaggctgga gtgcagtggt
     3061 acaatcttgg ctcactgcaa cctctgcctc ctgggcccaa cggatccttc cacctcagcc
     3121 tcccaagtag cttggactat aggtgcatgc caccatgcct ggctaatctt ttgcagcgat
     3181 gggattttgc caagttgccc aggctgatct tgaactcctg ggctcaagcc atcctccctc
     3241 ctcagcctcc caaaattctg ggattacagg cataagccaa tgtgcccatc caaagtttta
     3301 tttatttatt tttttgagat ggagtctcgt aaagttacct ttaaaaaaaa agttctattt
     3361 tccctgtatt ggtatctcct taaataaaat aaaatattcc tattgtaagt gatatgagaa
     3421 atctttaacc agccttatct aaaaataaaa agagaagcca ttgtaagaca aaaaaaaaaa
     3481 aaaaaa
//